CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1113 contig Csv1_Contig1113:319..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2D_HUMAN (Putative histone H2B type 2-D OS=Homo sapiens GN=HIST2H2BD PE=5 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 138
            +VHPD GI  KAMGIMNSF+NDIFE++A EASRLA YNK+ TITSR
Sbjct:   48 RVHPDTGIWCKAMGIMNSFLNDIFERIAGEASRLAHYNKRSTITSR 93          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2C_HUMAN (Putative histone H2B type 2-C OS=Homo sapiens GN=HIST2H2BC PE=5 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 138
            +VHPD GI  KAMGIMNSF+NDIFE++A EASRLA YNK+ TITSR
Sbjct:   48 RVHPDTGIWCKAMGIMNSFLNDIFERIAGEASRLAHYNKRSTITSR 93          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BV_BOVIN (Histone H2B subacrosomal variant OS=Bos taurus GN=SUBH2BV PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 35/78 (44.87%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            +V P  GISS+ + I+N+ IND+FE+++ EA  L  Y K+ T+T  +I+ AV L+LP +LAK+AV+ G +AV ++  S
Sbjct:   45 EVVPQKGISSRTIDIINTMINDMFERISTEACNLMYYRKRCTLTPEDIEKAVYLLLPEKLAKYAVAFGKEAVQRYVRS 122          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BV_MOUSE (Histone H2B subacrosomal variant OS=Mus musculus GN=Subh2bv PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            +V P+ GISS ++ IMN  INDIFE++A EA +     K+ T+T  +IQ AV L+LP +LA  AV+ G+KAV +F  S
Sbjct:   46 EVVPNRGISSYSVDIMNILINDIFERIATEACQQMFLRKRCTLTPGDIQQAVHLLLPKKLATLAVTFGSKAVHRFIHS 123          
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B2D_HUMAN5.135e-1376.09Putative histone H2B type 2-D OS=Homo sapiens GN=H... [more]
H2B2C_HUMAN5.135e-1376.09Putative histone H2B type 2-C OS=Homo sapiens GN=H... [more]
H2BV_BOVIN3.328e-1244.87Histone H2B subacrosomal variant OS=Bos taurus GN=... [more]
H2BV_MOUSE4.806e-1148.72Histone H2B subacrosomal variant OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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