CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1113 contig Csv1_Contig1113:319..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1J_HUMAN (Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.100e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   48 QVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.100e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   48 QVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B3_TIGCA (Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.437e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   45 QVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2E_MOUSE (Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.437e-31
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQT+VRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   48 QVHPDTGISSKAMGIMNSFVNDIFERIANEASRLAHYNKRSTITSREIQTSVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_TIGCA (Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.437e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   45 QVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.437e-31
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 231
            QVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   48 QVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_PLADU (Histone H2B OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.877e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   45 QVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.877e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   38 QVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 115
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_DROYA (Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.877e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   45 QVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_DROTE (Histone H2B OS=Drosophila teissieri GN=His2B PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.877e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   45 QVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B1J_HUMAN1.100e-3185.90Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ ... [more]
H2B12_XENLA1.100e-3185.90Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2[more]
H2B3_TIGCA1.437e-3185.90Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2[more]
H2B2E_MOUSE1.437e-3184.62Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be ... [more]
H2B1_TIGCA1.437e-3185.90Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3... [more]
H2B1C_HUMAN1.437e-3187.01Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]
H2B_PLADU1.877e-3185.90Histone H2B OS=Platynereis dumerilii PE=3 SV=2[more]
H2B_LITVA1.877e-3185.90Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]
H2B_DROYA1.877e-3185.90Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=... [more]
H2B_DROTE1.877e-3185.90Histone H2B OS=Drosophila teissieri GN=His2B PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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