CF834590

Overview
NameCF834590
Unique NameCF834590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: YON8_SCHPO (Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces pombe GN=SPBC1105.08 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.914e-44
Identity = 88/237 (37.13%), Postives = 124/237 (52.32%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACF 718
            + Y SA  YKL +G   KR    T    PG + A     N + W + SS  VPF +   LI L+   +VPL +VGS +GF+      PV+TN+IPRQIP  + +++   S +IGG +PF  + IELF IL S+W +                  TC  ++I+  YFQLCSE+Y WWWRS++T G                K+  + L + +LYFGY L+ S   F L G++GF+  F
Sbjct:  380 SGYVSALSYKLMQGMLRKRNLLLTPFVVPGFMLAAALFFNMVFWSKSSSSTVPFSSWLLLIFLYLLFTVPLSFVGSLIGFRSREFVPPVRTNQIPRQIPSHSIWLSSFPSAIIGGSIPFLVILIELFSILDSLWFHPLYFMFGFSFFCFGILVTTCIMVSIITVYFQLCSENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSLATAVLYFGYSLLISVLVFFLCGSVGFFGAF 616          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TMN2_YEAST (Transmembrane 9 superfamily member 2 OS=Saccharomyces cerevisiae GN=TMN2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.708e-38
Identity = 83/235 (35.32%), Postives = 127/235 (54.04%), Query Frame = 2
Query:   11 AYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKK-PAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYA 712
            +YAS  +YK F+G  WK     T I  PG +  +  ++N  +    SSG +P  ++F +I+LWF +SVPL + GS V  K+    E P KTN+I RQIP Q WY+    + LI GI  FG++ +EL+FI +S+W N+                 T + +TI++ Y+ LC E++ W WRS++  G                K ++  +++ +LY GY LI S    V+TG IGF++
Sbjct:  424 SYASMGVYKFFRGPYWKANMILTPILLPGAIFLLIVIMNFFLLFAHSSGVIPARSLFFIILLWFLVSVPLSFAGSIVAHKQCNWDEHPTKTNQIARQIPYQPWYLRTAQATLIAGIFSFGSIAVELYFIYSSLWFNKIFYMFGFLLFSFLLLTLTTSLVTILITYYSLCLENWLWQWRSFIIGGLG-CSIYTFIHSILFTKFKLGGVITVVLYLGYSLIISALCCVVTGAIGFFS 657          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TMN1_YEAST (Transmembrane 9 superfamily member 1 OS=Saccharomyces cerevisiae GN=EMP70 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.175e-37
Identity = 79/233 (33.91%), Postives = 121/233 (51.93%), Query Frame = 2
Query:   11 AYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGF 706
            +Y S  +YK F G  WK     T +  PG +  I   LN  +    SSG +P  T+F ++ LWF  S+PL + GS +  K+   ++ P KTN+I RQIP Q WY+  I + LI GI PFG++ +EL+FI TS+W N+                 T + +TI++ Y  LC E+++W WR ++  G+               K ++    + +LY GY  + S    ++TG+IGF
Sbjct:  419 SYTSMGIYKFFNGPYWKANLILTPLLVPGAILLIIIALNFFLMFVHSSGVIPASTLFFMVFLWFLFSIPLSFAGSLIARKRCHWDEHPTKTNQIARQIPFQPWYLKTIPATLIAGIFPFGSIAVELYFIYTSLWFNKIFYMFGFLFFSFLLLTLTSSLVTILITYHSLCLENWKWQWRGFIIGGAG-CALYVFIHSILFTKFKLGGFTTIVLYVGYSSVISLLCCLVTGSIGF 650          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 76/236 (32.20%), Postives = 110/236 (46.61%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFK-KPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYA 712
            + Y SA++YK   G +W      TA  F   +  +  + N +     S+ A+P  TM  +I +W  +  PL  VG   G +     E P +T   PR++P   WY      ILI G LPF A++IELF+I  S+W +                      IT+ L YFQL  ED++WWW S++  GS+                 +  L+    YF YMLI  + FF+L GT+GFY+
Sbjct:  337 SGYQSAKMYKNMGGNKWAWNIVLTATLFVAPLFIVVILSNTVAITWHSTVALPILTMIEVITIWLFVGFPLTVVGGIAGRRLSENFEAPCRTKNFPREVPPIQWYRRLPCQILIAGFLPFSAIYIELFYIFNSVWGHSTYTLYGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYS 572          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 71/236 (30.08%), Postives = 114/236 (48.31%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYA 712
            + Y S+  Y+   G  W      T+  F       + V+N++ W   S+ A+P  T+  L+ +W  +  PL  +G   G    +  D P +T  I R+IP Q WY + +  + +GG LPF A+ +EL++I  ++W  +                   A I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++
Sbjct:  356 SGYVSSHFYRQIGGERWVWNIILTSSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFS 591          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.209e-33
Identity = 71/236 (30.08%), Postives = 113/236 (47.88%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYA 712
            + Y S+  Y+   G  W      T   F       + V+N++ W   S+ A+P  T+  L+ +W  +  PL  +G   G    +  D P +T  I R+IP Q WY + +  + +GG LPF A+ +EL++I  ++W  +                   A I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++
Sbjct:  356 SGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFS 591          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.209e-33
Identity = 71/236 (30.08%), Postives = 113/236 (47.88%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYA 712
            + Y S+  Y+   G  W      T   F       + V+N++ W   S+ A+P  T+  L+ +W  +  PL  +G   G    +  D P +T  I R+IP Q WY + +  + +GG LPF A+ +EL++I  ++W  +                   A I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++
Sbjct:  356 SGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFS 591          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.400e-32
Identity = 71/236 (30.08%), Postives = 113/236 (47.88%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYA 712
            + Y S+  Y+   G  W      T   F       + V+N++ W   S+ A+P  T+  L+ +W  +  PL  +G   G    +  D P +T  I R+IP Q WY + +  + +GG LPF A+ +EL++I  ++W  +                   A I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++
Sbjct:  356 SGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTLVHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGTVQTVEFFGYSLLTGYVFFLMLGTISFFS 591          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.388e-32
Identity = 76/232 (32.76%), Postives = 113/232 (48.71%), Query Frame = 2
Query:   14 YASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGF 706
            Y    LY    G  W +  F  A   P +V    F +N +     +S A+PFGTM A+  + F + +PL  VG+ +G       + P + N +PR IPE+ W+M P   + +GGILPFG++FIE++FI TS W  +                     +TIV  YF L +EDY+W W S+L++ S+              K ++  L     YFGYM + S A  ++ G IG+
Sbjct:  339 YFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGY 570          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.388e-32
Identity = 76/232 (32.76%), Postives = 113/232 (48.71%), Query Frame = 2
Query:   14 YASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGF 706
            Y    LY    G  W +  F  A   P +V    F +N +     +S A+PFGTM A+  + F + +PL  VG+ +G       + P + N +PR IPE+ W+M P   + +GGILPFG++FIE++FI TS W  +                     +TIV  YF L +EDY+W W S+L++ S+              K ++  L     YFGYM + S A  ++ G IG+
Sbjct:  341 YFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGY 572          
The following BLAST results are available for this feature:
BLAST of CF834590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
YON8_SCHPO7.914e-4437.13Transmembrane 9 superfamily protein C1105.08 OS=Sc... [more]
TMN2_YEAST1.708e-3835.32Transmembrane 9 superfamily member 2 OS=Saccharomy... [more]
TMN1_YEAST7.175e-3733.91Transmembrane 9 superfamily member 1 OS=Saccharomy... [more]
PHG1B_DICDI1.654e-3332.20Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S1_MOUSE6.285e-3330.08Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_PONAB8.209e-3330.08Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_HUMAN8.209e-3330.08Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN1.400e-3230.08Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S3_MOUSE2.388e-3232.76Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
TM9S3_HUMAN2.388e-3232.76Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834590 ID=CF834590; Name=CF834590; organism=Citrus sinensis; type=EST; length=721bp
TCTTTTTGCTGCTTATGCCTCTGCTCGCTTGTACAAGTTGTTTAAAGGAA
CTGAGTGGAAGAGAATTGCCTTCAGAACTGCAATCACTTTCCCAGGAATT
GTCTCAGCCATTTTCTTTGTCTTGAATGCTCTTATTTGGGGACAGAAATC
GTCCGGGGCTGTGCCATTTGGGACCATGTTTGCTCTCATCGTCTTGTGGT
TTGGAATCTCAGTACCACTAGTATATGTTGGCAGTTTTGTTGGGTTCAAG
AAGCCAGCAATTGAGGATCCGGTGAAGACAAACAAAATCCCAAGGCAAAT
CCCTGAGCAGGCTTGGTATATGAACCCAATCTTCTCAATTCTCATTGGAG
GGATACTTCCATTTGGAGCCGTTTTCATTGAACTTTTCTTTATCCTCACA
TCAATCTGGCTGAACCAGTTCTATTACATCTTTGGTTTCCTCTTCTTGGT
CTTCGTCATTCTCATTGTCACCTGTGCCGAAATAACCATTGTGCTATGCT
ACTTCCAGTTGTGCAGTGAGGACTACCAATGGTGGTGGAGGTCATATCTT
ACATCAGGCTCTTCTGCTCTGTACCTCTTCCTTTACGCAACATTCTACTT
CTTCACAAAGCTTGAAATAACCAAGCTGGTTTCTGGAATACTCTACTTTG
GTTACATGCTGATTGCTTCATATGCATTTTTTGTACTAACGGGCACCATT
GGATTTTATGCATGCTTTTGG
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