CF834795

Overview
NameCF834795
Unique NameCF834795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834795_ssr362 microsatellite CF834795_ssr362:362..377. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7102 contig Csv1_Contig7102:820..1462. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834795 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 33/95 (34.74%), Postives = 47/95 (49.47%), Query Frame = 3 
Query:    3 AIWHWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 287
            A+W WMT  +  +PS+HD     W P+  D  ++R P +GT  NI+ G   CG+G    + + +  +  Y DLLGVG         L C  Q  F
Sbjct:  227 ALWFWMT-AQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGY-----GNNLDCYSQTPF 315
[Close]
BLAST of CF834795 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 34/95 (35.79%), Postives = 47/95 (49.47%), Query Frame = 3 
Query:    3 AIWHWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 287
            AIW WMT  + ++PS H+  +G W P+  DT + R P +G   NI+ G+  CG G   A  + +  Y  Y  +L V        E L C  QK F
Sbjct:  162 AIWFWMTE-QDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNV-----PTGENLDCNNQKNF 250
[Close]
BLAST of CF834795 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 33/95 (34.74%), Postives = 47/95 (49.47%), Query Frame = 3 
Query:    3 AIWHWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 287
            A+W WMT  +  +PS+HD     W P+  D  ++R P +GT  NI+ G   CG+G    + + +  +  Y DLLGVG         L C  Q  F
Sbjct:  226 ALWFWMT-AQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGY-----GNNLDCYSQTPF 314
[Close]
BLAST of CF834795 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 3 
Query:    3 AIWHWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 287
            AIW WMTP +  +PS H   VG W+P+  D  + R P +G   NI+ G   CG+G    + + +  Y  Y ++LGV      P   L C  Q++F
Sbjct:  223 AIWFWMTP-QSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGV-----NPGGNLDCYNQRSF 311
[Close]
BLAST of CF834795 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 3 
Query:    3 AIWHWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 287
            AIW WMTP + ++PS HD   G W P+  DT + R P +G   NI+ G   CG+G    + + + +Y   + ++ V      P + L C  Q+ F
Sbjct:  163 AIWFWMTP-QGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNV-----APGDNLDCYNQRNF 251
The following BLAST results are available for this feature:
BLAST of CF834795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CHIT_PHAVU7.280e-1134.74Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIA_SOLLC7.280e-1135.79Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI5_PHAVU7.280e-1134.74Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_BRANA7.280e-1135.79Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_PETHY9.508e-1133.68Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834795 ID=CF834795; Name=CF834795; organism=Citrus sinensis; type=EST; length=649bp
CTGCAATTTGGCATTGGATGACCCCAGTCAAGAAATCCCAGCCTTCAGCC
CATGATGCCTTTGTTGGCAACTGGAAGCCCACCAAGAATGATACTTTGTC
CAAACGGGGACCTAACTTTGGTACCACAATGAATATCCTCTATGGTGAGA
GCGTATGCGGTCAGGGTGATATTGATGCTATGAACAACATTGTCTCTCAT
TACTTGTATTACCTTGATCTGTTGGGTGTTGGCCGAGAGCAGGCAGGACC
TAATGAAGAACTCTCTTGTGCTGAGCAGAAAGCCTTCAACCCAAACACCG
CACCTTCAGCTGCATCTTCTTGAGGACGTTTATTGTAGCCAAGCTATTAT
TGTGGGAGTGACTCTCTCTCTCTCTCTAGGTGGGTACCATTACAATAAGA
CTGGGGTTAATTAAACTATTTGTTGTAAGTTTTTTTTTTTTTTTCCATCT
TTTCATATATTGCGCAAGGTCAATTAGTGTGTGGATTGGTCTGCCCCTCT
TCATTGCCGTTGTAGATTTGAGATTCATTTGGTTTGTAAAATCTTCGTTA
TATCTGGTTACATATGTAATGATGAACCGCATGAACCACTCGTGTGTTTC
AATAGCAGAATTGTAAAGGATATGCTTATATTTTATTTATTCCGGGATA
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