CF834943

Overview
NameCF834943
Unique NameCF834943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length243
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.078e-17
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 3 
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            LGVS DS +SHLAW+QT+R+  GLGDL  PL++D+ K IS +Y +L  D G+AL+GLFI D  G++ +S I NL  GRSV
Sbjct:   75 LGVSVDSEYSHLAWLQTDRESGGLGDLSYPLVSDLKKEISAAYNVLNSD-GVALRGLFIIDPKGIIQYSTINNLEFGRSV 153
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX3_MOUSE (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Mus musculus GN=Prdx3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.838e-17
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            + VS DS FSHLAW+ T RK  GLG +   L++DITK IS+ YG+L+   GIAL+GLFI D  GVV H ++ +L +GRSV
Sbjct:  131 VAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSV 210
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX2_PONAB (Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.135e-17
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 3 
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            LGVS DS F+HLAW+ T RK  GLG L  PL+AD+T+ +S+ YG+L  D GIA +GLFI D  GV+    + +L +GRSV
Sbjct:   73 LGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSV 152
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX2_MACFA (Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 3.135e-17
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 3 
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            LGVS DS F+HLAW+ T RK  GLG L  PL+AD+T+ +S+ YG+L  D GIA +GLFI D  GV+    + +L +GRSV
Sbjct:   73 LGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSV 152
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX2_HUMAN (Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5)

HSP 1 Score: 87.0409 bits (214), Expect = 3.135e-17
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 3 
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            LGVS DS F+HLAW+ T RK  GLG L  PL+AD+T+ +S+ YG+L  D GIA +GLFI D  GV+    + +L +GRSV
Sbjct:   73 LGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSV 152
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX2_BOVIN (Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.135e-17
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 3 
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            LGVS DS F+HLAW+ T RK  GLG L  PL+AD+T+ +S  YG+L  D GIA +GLF+ D  GV+    I +L +GRSV
Sbjct:   74 LGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEGIAYRGLFVIDGKGVLRQVTINDLPVGRSV 153
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX3_RAT (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Rattus norvegicus GN=Prdx3 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.095e-17
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            + VS DS FSHLAW+ T RK  GLG +   L++D+TK IS+ YG+L+   GIAL+GLFI D  GV+ H ++ +L +GRSV
Sbjct:  131 VAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDLTKQISRDYGVLLESAGIALRGLFIIDPNGVIKHLSVNDLPVGRSV 210
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX3_PONAB (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Pongo abelii GN=PRDX3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.985e-17
Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            + VS DS FSHLAW+ T RK  GLG +   L++D+TK IS+ YG+L+   G+AL+GLFI D  GV+ H ++ +L +GRSV
Sbjct:  130 VAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSV 209
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX3_HUMAN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens GN=PRDX3 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.985e-17
Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = 3 
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            + VS DS FSHLAW+ T RK  GLG +   L++D+TK IS+ YG+L+   G+AL+GLFI D  GV+ H ++ +L +GRSV
Sbjct:  130 VAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLALRGLFIIDPNGVIKHLSVNDLPVGRSV 209
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.123e-17
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 3 
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            LGVS DS +SHLAW+QT+R+  GLGDL+ PL++D+ K IS +Y +L    G+AL+GLFI D  G++ +S + NL  GRSV
Sbjct:   75 LGVSVDSEYSHLAWLQTDRESGGLGDLEYPLVSDLKKEISIAYNVL-NSGGVALRGLFIIDPKGIIQYSTVNNLEFGRSV 153
The following BLAST results are available for this feature:
BLAST of CF834943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
YCF42_PORYE1.078e-1756.25Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
PRDX3_MOUSE1.838e-1755.00Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX2_PONAB3.135e-1753.75Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3[more]
PRDX2_MACFA3.135e-1753.75Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE... [more]
PRDX2_HUMAN3.135e-1753.75Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5[more]
PRDX2_BOVIN3.135e-1753.75Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1[more]
PRDX3_RAT4.095e-1752.50Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_PONAB6.985e-1751.25Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_HUMAN6.985e-1751.25Thioredoxin-dependent peroxide reductase, mitochon... [more]
YCF42_PORPU9.123e-1753.75Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834943 ID=CF834943; Name=CF834943; organism=Citrus sinensis; type=EST; length=243bp
TATTGGGGGTCTCCACTGACAGTGTGTTTTCGCACTTGGCATGGGTCCAA
ACGAACAGAAAGCCATGAGGTCTTGGTGATTTGAAGGACCCACTAATTGC
TGATATCACCAAATCAATTTCAAAATCCTATGGTATTCTGATCCCTGATC
ACGGAATTGCATTGAAAGGACTCTTTATTAGTGACAAATAAGGAGTCGTC
CTTCACTCAGCCATTATCAACCTTGCCATTGGTAGGAGTGTTG
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