CF834943

Overview
NameCF834943
Unique NameCF834943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length243
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX3_BOVIN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Bos taurus GN=PRDX3 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.123e-17
Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            + VS DS FSHLAW+ T RK  GLG +   L++D+TK IS+ YG+L+   G+AL+GLFI D  GV+ H ++ +L +GRSV
Sbjct:  131 VAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSV 210          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX_ASCSU (Peroxiredoxin OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.528e-16
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            L  STDS FSHLAW+ T RK  GLG++K P+I+D    IS+ YG+L  D GIA +GLFI D  G++    + +L +GRSV
Sbjct:   71 LAASTDSQFSHLAWINTPRKQGGLGEMKIPIISDNNHQISRDYGVLKEDDGIAYRGLFIIDPKGILRQITVNDLPVGRSV 150          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: YKUU_BACSU (Thioredoxin-like protein ykuU OS=Bacillus subtilis GN=ykuU PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.723e-16
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +GVSTD++ +HLAW+ T+RK  GLG LK PL AD    +S+ YG+LI + G+AL+GLFI +  G + +  + +  IGR V
Sbjct:   74 IGVSTDTIHTHLAWINTDRKENGLGQLKYPLAADTNHEVSREYGVLIEEEGVALRGLFIINPEGELQYQTVFHNNIGRDV 153          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX2_PIG (Peroxiredoxin-2 (Fragment) OS=Sus scrofa GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.009e-15
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            LGVS D   +HLAW+ T RK  GLG LK PL+AD+T+++S  YG+L  D GIA +GLFI D  GV+    + +L +GR V
Sbjct:   34 LGVSVDXQXTHLAWINTPRKEGGLGPLKIPLLADVTRNLSLDYGVLKEDEGIAYRGLFIIDGKGVLRQITVNDLPVGRXV 113          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX1_CHICK (Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.247e-15
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +G S DS F HLAW+ T +K  GLG +K PL++D  + I+K YG+L  D GIA +GLFI D+ G++    I +L +GRSV
Sbjct:   74 IGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIAYRGLFIIDEKGILRQITINDLPVGRSV 153          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TDX_CYNPY (Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +  S DS F HLAW  T+RK  GLG +K PL+AD  ++IS+ YG+L  D GI+ +GLFI D  G++    I +L +GRSV
Sbjct:   74 IAASVDSHFCHLAWTNTSRKEGGLGSMKIPLVADTKRTISQDYGVLKEDEGISFRGLFIIDDKGILRQITINDLPVGRSV 153          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TSA2_YEAST (Peroxiredoxin TSA2 OS=Saccharomyces cerevisiae GN=TSA2 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 5.006e-15
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            L  STDS +S LAW    RK  GLG +K PL+AD   S+S+ YG+LI   GIAL+GLFI D  G++ H  I +L++GR+V
Sbjct:   70 LFASTDSEYSLLAWTNLPRKDGGLGPVKVPLLADKNHSLSRDYGVLIEKEGIALRGLFIIDPKGIIRHITINDLSVGRNV 149          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TSA1_YEAST (Peroxiredoxin TSA1 OS=Saccharomyces cerevisiae GN=TSA1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 6.538e-15
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            L  STDS +S LAW    RK  GLG +  PL+AD   S+S+ YG+LI + G+AL+GLFI D  GV+ H  I +L +GR+V
Sbjct:   70 LFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNV 149          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TDX1_CAEEL (Probable peroxiredoxin prdx-3 OS=Caenorhabditis elegans GN=prdx-3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.538e-15
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 3
Query:   12 STDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            S DS FSHLAWV T RK  GLGD+  PL+AD  K I+ S+G+L  + G++ +GLF+ D  G V H+   +L +GRSV
Sbjct:  103 SCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFLIDPSGTVRHTTCNDLPVGRSV 179          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX4_HUMAN (Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.484e-14
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 3
Query:   12 STDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            S DS F+HLAW+ T R+  GLG ++ PL++D+T  ISK YG+ + D G  L+GLFI D  G++    + +L +GRSV
Sbjct:  149 SVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSV 225          
The following BLAST results are available for this feature:
BLAST of CF834943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PRDX3_BOVIN9.123e-1751.25Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX_ASCSU4.528e-1651.25Peroxiredoxin OS=Ascaris suum PE=2 SV=1[more]
YKUU_BACSU7.723e-1647.50Thioredoxin-like protein ykuU OS=Bacillus subtilis... [more]
PRDX2_PIG1.009e-1551.25Peroxiredoxin-2 (Fragment) OS=Sus scrofa GN=PRDX2 ... [more]
PRDX1_CHICK2.247e-1548.75Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=... [more]
TDX_CYNPY2.935e-1548.75Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1[more]
TSA2_YEAST5.006e-1551.25Peroxiredoxin TSA2 OS=Saccharomyces cerevisiae GN=... [more]
TSA1_YEAST6.538e-1550.00Peroxiredoxin TSA1 OS=Saccharomyces cerevisiae GN=... [more]
TDX1_CAEEL6.538e-1550.65Probable peroxiredoxin prdx-3 OS=Caenorhabditis el... [more]
PRDX4_HUMAN2.484e-1446.75Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834943 ID=CF834943; Name=CF834943; organism=Citrus sinensis; type=EST; length=243bp
TATTGGGGGTCTCCACTGACAGTGTGTTTTCGCACTTGGCATGGGTCCAA
ACGAACAGAAAGCCATGAGGTCTTGGTGATTTGAAGGACCCACTAATTGC
TGATATCACCAAATCAATTTCAAAATCCTATGGTATTCTGATCCCTGATC
ACGGAATTGCATTGAAAGGACTCTTTATTAGTGACAAATAAGGAGTCGTC
CTTCACTCAGCCATTATCAACCTTGCCATTGGTAGGAGTGTTG
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