CF834943

Overview
NameCF834943
Unique NameCF834943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length243
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TSA1_SCHPO (Peroxiredoxin tpx1 OS=Schizosaccharomyces pombe GN=tpx1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.245e-14
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 3
Query:   12 STDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            STDS +SHLA++ T RK  GLG +  PL+AD +  +S+ YG+LI D G+A +GLF+ D  GV+    I +L +GRSV
Sbjct:   73 STDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLFLIDPKGVLRQITINDLPVGRSV 149          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TDX2_BRUMA (Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.245e-14
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +  STDS FSHLAWV T+RK  GLG +  P++A     IS++YG+L  D GIA +GLFI D  G++    I +L +GRSV
Sbjct:   75 MACSTDSHFSHLAWVNTDRKMGGLGQMNIPILAYTNHVISRAYGVLKEDDGIAYRGLFIIDPKGILGQITINDLPVGRSV 154          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TDX1_BRUMA (Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.245e-14
Identity = 38/81 (46.91%), Postives = 56/81 (69.14%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*G-LGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +  S DS FSHLAW+QT R   G LGD+K P++AD  K I+ ++G+L  + GI+ +GLF+ D  G + HS + +L++GRSV
Sbjct:  100 IACSCDSHFSHLAWIQTPRSEVGGLGDMKIPVLADFNKDIANAFGVLDHETGISYRGLFLIDPSGEIRHSLVNDLSVGRSV 180          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TDX_ECHGR (Thioredoxin peroxidase OS=Echinococcus granulosus GN=TPX PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            L  STDS + HLAW   +RK  G+  ++ P++AD    IS+ YG+LI D GIAL+GLFI D  GV+    I +L +GRSV
Sbjct:   70 LACSTDSGYCHLAWNNVSRKEGGVQGMRIPMLADTNHKISRDYGVLIEDQGIALRGLFIIDDKGVLRQITINDLPVGRSV 149          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX1_MOUSE (Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +G S DS F HLAW+ T +K  GLG +  PLI+D  ++I++ YG+L  D GI+ +GLFI D  G++    I +L +GRSV
Sbjct:   74 IGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSV 153          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +G S DS F HLAW+ T +K  GLG +  PLI+D  ++I++ YG+L  D GI+ +GLFI D  G++    I +L +GRSV
Sbjct:   74 IGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSV 153          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX4_BOVIN (Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   12 STDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            S DS F+HLAW+ T R+  GLG +  PL+AD+   ISK YG+ + D G  L+GLFI D  G++    + +L +GRSV
Sbjct:  152 SVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSV 228          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX1_RAT (Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +G S DS F HLAW+ T +K  GLG +  PL++D  ++I++ YG+L  D GI+ +GLFI D  G++    I +L +GRSV
Sbjct:   74 IGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSV 153          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX1_HUMAN (Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +G S DS F HLAWV T +K  GLG +  PL++D  ++I++ YG+L  D GI+ +GLFI D  G++    + +L +GRSV
Sbjct:   74 IGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSV 153          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX1_GECJA (Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +G S DS F HLAW+ T +K  GLG +  PL++D  + I+K YGIL  D GI+ +GLFI D  G +    I +L +GRSV
Sbjct:   74 IGASVDSHFCHLAWINTPKKQGGLGSMHIPLVSDTKRVIAKDYGILKEDEGISYRGLFIIDDKGTLRQITINDLPVGRSV 153          
The following BLAST results are available for this feature:
BLAST of CF834943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TSA1_SCHPO3.245e-1449.35Peroxiredoxin tpx1 OS=Schizosaccharomyces pombe GN... [more]
TDX2_BRUMA3.245e-1450.00Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2... [more]
TDX1_BRUMA3.245e-1446.91Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 ... [more]
TDX_ECHGR4.238e-1448.75Thioredoxin peroxidase OS=Echinococcus granulosus ... [more]
PRDX1_MOUSE4.238e-1446.25Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1[more]
PRDX1_BOVIN4.238e-1446.25Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1[more]
PRDX4_BOVIN5.535e-1446.75Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1[more]
PRDX1_RAT5.535e-1445.00Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1... [more]
PRDX1_HUMAN5.535e-1445.00Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1[more]
PRDX1_GECJA5.535e-1447.50Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834943 ID=CF834943; Name=CF834943; organism=Citrus sinensis; type=EST; length=243bp
TATTGGGGGTCTCCACTGACAGTGTGTTTTCGCACTTGGCATGGGTCCAA
ACGAACAGAAAGCCATGAGGTCTTGGTGATTTGAAGGACCCACTAATTGC
TGATATCACCAAATCAATTTCAAAATCCTATGGTATTCTGATCCCTGATC
ACGGAATTGCATTGAAAGGACTCTTTATTAGTGACAAATAAGGAGTCGTC
CTTCACTCAGCCATTATCAACCTTGCCATTGGTAGGAGTGTTG
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