CF834943

Overview
NameCF834943
Unique NameCF834943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length243
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX1_CRIGR (Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.535e-14
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +G S DS F HLAW+ T +K  GLG +  PL++D  ++I++ YG+L  D GI+ +GLFI D  G++    I +L +GRSV
Sbjct:   74 IGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSV 153          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX4_RAT (Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.228e-14
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 3
Query:   12 STDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            S DS F+HLAW+ T R+  GLG ++ PL++D+   ISK YG+ + D G  L+GLFI D  GV+    + +L +GRSV
Sbjct:  151 SVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSV 227          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX4_MOUSE (Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.228e-14
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 3
Query:   12 STDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            S DS F+HLAW+ T R+  GLG ++ PL++D+   ISK YG+ + D G  L+GLFI D  GV+    + +L +GRSV
Sbjct:  152 SVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSV 228          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX1_MYOLU (Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.228e-14
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +G S DS F HLAW+ T +K  GLG +  PL++D  ++I++ YG+L  D GI+ +GLFI D  G++    + +L +GRSV
Sbjct:   74 IGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSV 153          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: R20K_CLOPA (Putative peroxiredoxin in rubredoxin operon OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.992e-13
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            L VS DS +SH  W+  + K  GLG +  P+ +D T  +S  YGI I + GI+L+GLFI D  G+V +S + +L +GRSV
Sbjct:   72 LAVSCDSQYSHETWINQDIKQGGLGKINFPIASDKTTEVSTKYGIQIEEEGISLRGLFIIDPEGIVRYSVVHDLNVGRSV 151          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TSA1_CANAL (Peroxiredoxin TSA1 OS=Candida albicans GN=TSA1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.044e-12
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            L  STDS ++ LAW    RK  G+G +  P++AD   S+S+ YG+LI + G+AL+G+F+ D  GV+    I +L +GRSV
Sbjct:   70 LFASTDSEYTWLAWTNVARKDGGIGKVDFPVLADTNHSLSRDYGVLIEEEGVALRGIFLIDPKGVLRQITINDLPVGRSV 149          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TDX_TRYBR (Thioredoxin peroxidase OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.044e-12
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +  S DS FSHLAW    RK  GLG +  P++AD TKSI K+YG+L  + G+A +GLFI D    +    I +L +GR+V
Sbjct:   74 IACSMDSEFSHLAWTNVERKKGGLGTMNIPILADKTKSIMKAYGVLKEEDGVAYRGLFIIDPQQNLRQITINDLPVGRNV 153          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: YCF42_ODOSI (Putative peroxiredoxin ycf42 OS=Odontella sinensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.780e-12
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            L +S DS FSHL ++  NR+  GL DL  PL++D+T++I++ Y +L  D G+A  GLFI DK G++ +  + NL  GR++
Sbjct:   73 LAISVDSPFSHLQYLLCNREEGGLEDLNYPLVSDLTQTITRDYQVL-TDEGLAFPGLFIIDKEGIIQYYTVNNLLCGRNI 151          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: PRDX1_DROME (Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafrac1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.780e-12
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +G STDS F+HLAW+ T RK  GLG +  PL+AD +  +++ YG+L  + GI  +GLFI D    +    + +L +GRSV
Sbjct:   69 IGCSTDSQFTHLAWINTPRKQGGLGSMDIPLLADKSMKVARDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSV 148          
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAI (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU182 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.968e-11
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    3 LGVSTDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            +GVS DSV+ H AW  T  K  G+G +  P+++D+   I KSYGI  P+ GIAL+  F+ D   ++ H  + +L  GR++
Sbjct:   72 VGVSIDSVYVHQAWQNTLPKNGGIGKINFPMVSDVKHDIQKSYGIQHPNLGIALRASFLIDSNWIIRHQVVNDLPFGRNI 151          
The following BLAST results are available for this feature:
BLAST of CF834943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PRDX1_CRIGR5.535e-1445.00Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=... [more]
PRDX4_RAT7.228e-1446.75Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2... [more]
PRDX4_MOUSE7.228e-1446.75Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1[more]
PRDX1_MYOLU7.228e-1443.75Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 ... [more]
R20K_CLOPA7.992e-1345.00Putative peroxiredoxin in rubredoxin operon OS=Clo... [more]
TSA1_CANAL1.044e-1243.75Peroxiredoxin TSA1 OS=Candida albicans GN=TSA1 PE=... [more]
TDX_TRYBR1.044e-1246.25Thioredoxin peroxidase OS=Trypanosoma brucei rhode... [more]
YCF42_ODOSI1.780e-1243.75Putative peroxiredoxin ycf42 OS=Odontella sinensis... [more]
PRDX1_DROME1.780e-1243.75Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafr... [more]
TSAA_BUCAI1.968e-1140.00Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834943 ID=CF834943; Name=CF834943; organism=Citrus sinensis; type=EST; length=243bp
TATTGGGGGTCTCCACTGACAGTGTGTTTTCGCACTTGGCATGGGTCCAA
ACGAACAGAAAGCCATGAGGTCTTGGTGATTTGAAGGACCCACTAATTGC
TGATATCACCAAATCAATTTCAAAATCCTATGGTATTCTGATCCCTGATC
ACGGAATTGCATTGAAAGGACTCTTTATTAGTGACAAATAAGGAGTCGTC
CTTCACTCAGCCATTATCAACCTTGCCATTGGTAGGAGTGTTG
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