CF834943

Overview
NameCF834943
Unique NameCF834943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length243
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834943 vs. ExPASy Swiss-Prot
Match: TDX_FASHE (Thioredoxin peroxidase OS=Fasciola hepatica PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.769e-11
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 3 
Query:   12 STDSVFSHLAWVQTNRKP*GLGDLKDPLIADITKSISKSYGILIPDHGIALKGLFISDK*GVVLHSAIINLAIGRSV 242
            STDSV+SHL W + +RK  G+G L  PL+AD   S+S+++G+L  + G   +G F+ D  GV+    + +  +GRSV
Sbjct:   72 STDSVYSHLQWTKMDRKVGGIGQLNFPLLADKNMSVSRAFGVLDEEQGNTYRGNFLIDPKGVLRQITVNDDPVGRSV 148
The following BLAST results are available for this feature:
BLAST of CF834943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TDX_FASHE9.769e-1141.56Thioredoxin peroxidase OS=Fasciola hepatica PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06G09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834943 ID=CF834943; Name=CF834943; organism=Citrus sinensis; type=EST; length=243bp
TATTGGGGGTCTCCACTGACAGTGTGTTTTCGCACTTGGCATGGGTCCAA
ACGAACAGAAAGCCATGAGGTCTTGGTGATTTGAAGGACCCACTAATTGC
TGATATCACCAAATCAATTTCAAAATCCTATGGTATTCTGATCCCTGATC
ACGGAATTGCATTGAAAGGACTCTTTATTAGTGACAAATAAGGAGTCGTC
CTTCACTCAGCCATTATCAACCTTGCCATTGGTAGGAGTGTTG
back to top