CF834944

Overview
NameCF834944
Unique NameCF834944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX2_MOUSE (Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 4.021e-29
Identity = 60/105 (57.14%), Postives = 82/105 (78.10%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG L  PL+ D+TKS+S++YG+L  D+GIA RGLFIID +GV++Q +VN+L +GRSV+E LR +QA Q+  E+  EVCP+GWKPG  ++KP+   SKEYF+
Sbjct:   92 KEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAYRGLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKPNVDDSKEYFS 195          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX1_CHICK (Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.021e-29
Identity = 58/105 (55.24%), Postives = 82/105 (78.10%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG +K PL+ D  + I+K YG+L  D+GIA RGLFIID++G+++Q ++N+L +GRSV+ETLR +QA QF  ++  EVCP+GWKPG  ++KPD + SKEYF+
Sbjct:   93 KQGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIAYRGLFIIDEKGILRQITINDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKEYFS 196          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX2_CRIGR (Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.528e-28
Identity = 58/105 (55.24%), Postives = 82/105 (78.10%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG L  PL+ D+T+S+S++YG+L  D+GIA RGLFIID +G+++Q +VN+L +GRSV+E LR +QA Q+  E+  EVCP+GWKPG  ++KP+   SKEYF+
Sbjct:   92 KEGGLGPLNIPLLADVTRSLSENYGVLKTDEGIAYRGLFIIDAKGILRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKPNVDDSKEYFS 195          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX2_MACFA (Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 58/105 (55.24%), Postives = 80/105 (76.19%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG L  PL+ D+T+ +S+ YG+L  D+GIA RGLFIID +GV++Q +VN+L +GRSV+E LR +QA Q+  E+  EVCP+GWKPG  ++KP+   SKEYF+
Sbjct:   92 KEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKPNVDDSKEYFS 195          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX2_HUMAN (Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 58/105 (55.24%), Postives = 80/105 (76.19%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG L  PL+ D+T+ +S+ YG+L  D+GIA RGLFIID +GV++Q +VN+L +GRSV+E LR +QA Q+  E+  EVCP+GWKPG  ++KP+   SKEYF+
Sbjct:   92 KEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPGSDTIKPNVDDSKEYFS 195          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX3_MOUSE (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Mus musculus GN=Prdx3 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.904e-28
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = -1
Query:  214 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFAAI 534
            K+GGLG +   L+ DITK IS+ YG+L+   GIALRGLFIID  GV++  SVN+L +GRSVEETLR ++A QFV E   EVCP+ W P   ++KP P  SKEYF  +
Sbjct:  150 KNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFV-ETHGEVCPANWTPESPTIKPSPTASKEYFEKV 255          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX1_MYOLU (Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.904e-28
Identity = 56/105 (53.33%), Postives = 81/105 (77.14%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG +  PL+ D  ++I++ YG+L  D+GI+ RGLFIID +G+++Q +VN+L +GRSV+ETLR +QA QF  ++  EVCP+GWKPG  ++KPD + SKEYF+
Sbjct:   93 KQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKEYFS 196          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX1_HUMAN (Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.904e-28
Identity = 56/105 (53.33%), Postives = 81/105 (77.14%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG +  PL+ D  ++I++ YG+L  D+GI+ RGLFIID +G+++Q +VN+L +GRSV+ETLR +QA QF  ++  EVCP+GWKPG  ++KPD + SKEYF+
Sbjct:   93 KQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKEYFS 196          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.904e-28
Identity = 56/105 (53.33%), Postives = 81/105 (77.14%), Query Frame = -1
Query:  220 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYFA 534
            K GGLG +  PLI D  ++I++ YG+L  D+GI+ RGLFIID +G+++Q ++N+L +GRSV+ETLR +QA QF  ++  EVCP+GWKPG  ++KPD + SKEYF+
Sbjct:   93 KQGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKH-GEVCPAGWKPGSDTIKPDVQKSKEYFS 196          
BLAST of CF834944 vs. ExPASy Swiss-Prot
Match: TSA1_CANAL (Peroxiredoxin TSA1 OS=Candida albicans GN=TSA1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.689e-27
Identity = 53/104 (50.96%), Postives = 80/104 (76.92%), Query Frame = -1
Query:  223 KSGGLGDLKYPLIGDITKSISKSYGILIRDQGIALRGLFIIDKEGVIQQSSVNNLAIGRSVEETLRTLQALQFVQENPDEVCPSGWKPGVKSMKPDPKLSKEYF 534
            K GG+G + +P++ D   S+S+ YG+LI ++G+ALRG+F+ID +GV++Q ++N+L +GRSVEE+LR L+A QF  E   EVCP+ W PG +++KP P+ SKEYF
Sbjct:   89 KDGGIGKVDFPVLADTNHSLSRDYGVLIEEEGVALRGIFLIDPKGVLRQITINDLPVGRSVEESLRLLEAFQFT-EKYGEVCPANWHPGDETIKPSPEASKEYF 191          
The following BLAST results are available for this feature:
BLAST of CF834944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PRDX2_MOUSE4.021e-2957.14Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3[more]
PRDX1_CHICK4.021e-2955.24Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=... [more]
PRDX2_CRIGR1.528e-2855.24Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=... [more]
PRDX2_MACFA7.583e-2855.24Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE... [more]
PRDX2_HUMAN7.583e-2855.24Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5[more]
PRDX3_MOUSE9.904e-2856.07Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX1_MYOLU9.904e-2853.33Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 ... [more]
PRDX1_HUMAN9.904e-2853.33Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1[more]
PRDX1_BOVIN9.904e-2853.33Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1[more]
TSA1_CANAL1.689e-2750.96Peroxiredoxin TSA1 OS=Candida albicans GN=TSA1 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834944 ID=CF834944; Name=CF834944; organism=Citrus sinensis; type=EST; length=534bp
AGAGGCCCTTTAAAAGAGATTTTGTTGTGCCTGCATTACAAAGGAACCCT
TAAGGGGGACAAATCCAGTCCAATGCATTTATTCCCCACAGGCATGCTCC
GCAAAACTCAACAGATAAGTAGCAAAATCACATTACATGGAAAAACAAAA
CTCATCTACCCCTCCCTAATAGACATAGATATGCATACCAGGTTCCAATG
CTAACCCCTCTTATATAGCTGCAAAGTACTCCTTGCTGAGTTTTGGGTCT
GGCTTCATGGATTTGACCCCGGGCTTCCATCCTGATGGGCAAACTTCATC
TGGGTTCTCCTGCACAAACTGCAAGGCCTGAAGTGTTCTCAGTGTCTCTT
CAACACTCCTACCAATGGCAAGGTTGTTAACGGATGACTGCTGGATGACT
CCTTCTTTGTCAATAATAAAGAGTCCTCTCAATGCAATTCCCTGATCACG
GATCAGAATACCATAGGATTTTGAAATTGATTTGGTGATATCACCAATTA
GGGGGTACTTCAAATCACCAAGACCACCTGACTT
back to top