CF834945

Overview
NameCF834945
Unique NameCF834945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11471 contig Csv1_Contig11471:353..1125. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: Y2262_MYCBO (Putative peroxiredoxin Mb2262c OS=Mycobacterium bovis GN=Mb2262c PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   26 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK--SISKSYGILIPDQGIALRGLFIIDKEGVIQ 382
            DQ    V L  Y G K V+L F+PL FT +C  E+    D   EFE  ++  L +S     +H  W     +SG      +PL++D     ++S++YG+     GIA RG F++D+ G+I+
Sbjct:   15 DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWA---TQSG----FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIR 128          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: Y2238_MYCTU (Putative peroxiredoxin Rv2238c/MT2298 OS=Mycobacterium tuberculosis GN=Rv2238c PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   26 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITK--SISKSYGILIPDQGIALRGLFIIDKEGVIQ 382
            DQ    V L  Y G K V+L F+PL FT +C  E+    D   EFE  ++  L +S     +H  W     +SG      +PL++D     ++S++YG+     GIA RG F++D+ G+I+
Sbjct:   15 DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWA---TQSG----FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIR 128          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: PRXQ_POPJC (Peroxiredoxin Q, chloroplastic OS=Populus jackii GN=PRXQ PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 2
Query:   26 DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG-IALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQAL 451
            DQ+   + LS + GK  V+++FYP D T  C  +  AF D Y +F+K   E++G+S D   SH A+ +  R       L + L++D    I K +G+     G +  R  +++DK+GV+Q          + +D TL+ LQ+L
Sbjct:   79 DQDGKTLSLSKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVVGISGDDPSSHKAFAKKYR-------LPFTLLSDEGNKIRKEWGVPADLFGTLPGRQTYVLDKKGVVQLIYNNQFQPEKHIDETLKLLQSL 213          
The following BLAST results are available for this feature:
BLAST of CF834945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
Y2262_MYCBO7.589e-1133.88Putative peroxiredoxin Mb2262c OS=Mycobacterium bo... [more]
Y2238_MYCTU7.589e-1133.88Putative peroxiredoxin Rv2238c/MT2298 OS=Mycobacte... [more]
PRXQ_POPJC7.589e-1132.17Peroxiredoxin Q, chloroplastic OS=Populus jackii G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834945 ID=CF834945; Name=CF834945; organism=Citrus sinensis; type=EST; length=773bp
TGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTTCATCAATGTCAAGC
TTTCGGATTACATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTG
GACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCTGTGACCGATA
TGCTGAATTTGAGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACA
GTGTGTTTTCACACTTGGCATGGGTCCAAACAGACAGAAAGTCAGGTGGT
CTTGGTGATTTGAAGTACCCACTAATTGCTGATATCACCAAATCAATTTC
AAAATCCTATGGTATTCTGATCCCTGATCAGGGAATTGCATTGAGAGGAC
TCTTTATTATTGACAAAGAAGGAGTCATCCAGCACTCAACCATTATCAAC
CTTGCCATTGGTAGGAGTGTTGACTAGACACTGAGAACACTTCAGGCCTT
GCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAGGATGGAAGC
CCGGGGACAAATCCATGAAGCCAGACCCAAAACTCAGCAAGGAGTACTTT
GCAGCTATATAAGAGGGGTTAGCATTGGAACCTCGTATGCATATCTATGT
CTATTAGGGAGGTGTAGATGAGTTTTGTTTTTCCATGTAATGTGATTTTG
CTACTTACTGTTGAGTTTTGCGGAGCAGCCTGTGGGGAATAAATGCATTG
GACTGGATTTGTCCACCTCTTTACTTCCTTTGTAATGCAGACACAACAAA
ATCTCTTGGTATTGTCCTCTTCA
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