CF834945

Overview
NameCF834945
Unique NameCF834945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11471 contig Csv1_Contig11471:353..1125. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: PRDX4_RAT (Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.045e-52
Identity = 98/178 (55.06%), Postives = 130/178 (73.03%), Query Frame = 2
Query:   17 AVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYF 550
            AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+   ISK YG+ + D G  LRGLFIID +GV++  T+ +L +GRSVD TLR +QA QY  ++  EVCPAGWKPG +++ PDP    +YF
Sbjct:   94 AVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSETIIPDPAGKLKYF 269          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: PRDX4_MOUSE (Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.045e-52
Identity = 98/178 (55.06%), Postives = 130/178 (73.03%), Query Frame = 2
Query:   17 AVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYF 550
            AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+   ISK YG+ + D G  LRGLFIID +GV++  T+ +L +GRSVD TLR +QA QY  ++  EVCPAGWKPG +++ PDP    +YF
Sbjct:   95 AVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSGHTLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSETIIPDPAGKLKYF 270          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: PRDX4_BOVIN (Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.978e-52
Identity = 98/178 (55.06%), Postives = 128/178 (71.91%), Query Frame = 2
Query:   17 AVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYF 550
            AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG +  PL+AD+   ISK YG+ + D G  LRGLFIID +G+++  T+ +L +GRSVD TLR +QA QY  ++  EVCPAGWKPG +++ PDP    +YF
Sbjct:   95 AVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKH-GEVCPAGWKPGSETIIPDPAGKLKYF 270          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: PRDX1_DROME (Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafrac1 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.195e-52
Identity = 101/182 (55.49%), Postives = 130/182 (71.43%), Query Frame = 2
Query:    5 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYF 550
            FA  AV +  F ++KLSDY GK Y++LFFYPLDFTFVCPTEI AF +  AEF K+N E++G STDS F+HLAW+ T RK GGLG +  PL+AD +  +++ YG+L  + GI  RGLFIID +  ++  T+ +L +GRSV+ TLR +QA QY  +   EVCPA WKPG K+M  DP  SKEYF
Sbjct:   11 FAGTAVVNGVFKDIKLSDYKGK-YLVLFFYPLDFTFVCPTEIIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLLADKSMKVARDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQYT-DKYGEVCPANWKPGQKTMVADPTKSKEYF 190          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: PRDX3_BOVIN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Bos taurus GN=PRDX3 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 6.785e-52
Identity = 98/185 (52.97%), Postives = 132/185 (71.35%), Query Frame = 2
Query:    5 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 559
            F   AV   EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AF D+ +EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D+TK IS+ YG+L+   G+ALRGLFIID  GVI+H ++ +L +GRSV+ TLR ++A Q+V+ +  EVCPA W P   ++KP P  S+EYF  +
Sbjct:   73 FKGTAVVSGEFKEISLDDFKGK-YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAH-GEVCPANWTPESPTIKPHPTASREYFEKV 255          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: PRDX3_RAT (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Rattus norvegicus GN=Prdx3 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 8.861e-52
Identity = 100/185 (54.05%), Postives = 130/185 (70.27%), Query Frame = 2
Query:    5 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 559
            F   AV + EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AF D+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D+TK IS+ YG+L+   GIALRGLFIID  GVI+H ++ +L +GRSV+  LR ++A Q+V E   EVCPA W P   ++KP P  SKEYF  +
Sbjct:   73 FKGTAVVNGEFKELSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDLTKQISRDYGVLLESAGIALRGLFIIDPNGVIKHLSVNDLPVGRSVEEPLRLVKAFQFV-ETHGEVCPANWTPESPTIKPSPTASKEYFEKV 255          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: TDX2_BRUMA (Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.671e-50
Identity = 100/183 (54.64%), Postives = 129/183 (70.49%), Query Frame = 2
Query:    2 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYF 550
            +F   AV + +F  + L  + GK YV+L FYPLDFTFVCPTEI AF DR AEF++L+  ++  STDS FSHLAWV TDRK GGLG +  P++A     IS++YG+L  D GIA RGLFIID +G++   TI +L +GRSVD TLR +QA Q+V ++  EVCPA W PG +++KP  K SK YF
Sbjct:   16 NFKTTAVVNGDFKEISLGQFKGK-YVVLLFYPLDFTFVCPTEIIAFSDRIAEFKQLDVAVMACSTDSHFSHLAWVNTDRKMGGLGQMNIPILAYTNHVISRAYGVLKEDDGIAYRGLFIIDPKGILGQITINDLPVGRSVDETLRLIQAFQFVDKH-GEVCPANWHPGSETIKPGVKESKAYF 196          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: YKUU_BACSU (Thioredoxin-like protein ykuU OS=Bacillus subtilis GN=ykuU PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.170e-49
Identity = 96/173 (55.49%), Postives = 123/173 (71.10%), Query Frame = 2
Query:    5 FAAEAVF-DQEFINVKLSDYI-GKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSM 517
            F  EAV   +EF  V L + +   K+ +LFFYP+DFTFVCPTEITA  DRY EFE L+ E++GVSTD++ +HLAW+ TDRK  GLG LKYPL AD    +S+ YG+LI ++G+ALRGLFII+ EG +Q+ T+ +  IGR VD TLR LQALQ        +CPA WKPG K++
Sbjct:   13 FEMEAVLASKEFGKVSLEENMKNDKWTVLFFYPMDFTFVCPTEITAMSDRYDEFEDLDAEVIGVSTDTIHTHLAWINTDRKENGLGQLKYPLAADTNHEVSREYGVLIEEEGVALRGLFIINPEGELQYQTVFHNNIGRDVDETLRVLQALQ-----TGGLCPANWKPGQKTL 180          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: TDX_TRYBR (Thioredoxin peroxidase OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.564e-48
Identity = 94/175 (53.71%), Postives = 127/175 (72.57%), Query Frame = 2
Query:   35 FINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 559
            F  V L+ Y GK +V+LFFYPLDFTFVCPTEI  F DR  EF  ++ E++  S DS FSHLAW   +RK GGLG +  P++AD TKSI K+YG+L  + G+A RGLFIID +  ++  TI +L +GR+VD TLR ++A Q+V+++  EVCPA WKPG K+MK DP  S++YF+++
Sbjct:   26 FKKVDLASYRGK-WVVLFFYPLDFTFVCPTEICQFSDRVKEFNDVDCEVIACSMDSEFSHLAWTNVERKKGGLGTMNIPILADKTKSIMKAYGVLKEEDGVAYRGLFIIDPQQNLRQITINDLPVGRNVDETLRLVKAFQFVEKH-GEVCPANWKPGSKTMKADPNGSQDYFSSM 198          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: PRDX2_PONAB (Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.564e-48
Identity = 96/161 (59.63%), Postives = 118/161 (73.29%), Query Frame = 2
Query:    2 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVC 484
            DF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AF +R  +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S+ YG+L  D+GIA RGLFIID +GV++  T+ +L +GRSVD  LR +QA QY  E+ +  C
Sbjct:   14 DFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFHKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEGPC 173          
The following BLAST results are available for this feature:
BLAST of CF834945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
PRDX4_RAT3.045e-5255.06Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2... [more]
PRDX4_MOUSE3.045e-5255.06Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1[more]
PRDX4_BOVIN3.978e-5255.06Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1[more]
PRDX1_DROME5.195e-5255.49Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafr... [more]
PRDX3_BOVIN6.785e-5252.97Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_RAT8.861e-5254.05Thioredoxin-dependent peroxide reductase, mitochon... [more]
TDX2_BRUMA1.671e-5054.64Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2... [more]
YKUU_BACSU9.170e-4955.49Thioredoxin-like protein ykuU OS=Bacillus subtilis... [more]
TDX_TRYBR1.564e-4853.71Thioredoxin peroxidase OS=Trypanosoma brucei rhode... [more]
PRDX2_PONAB1.564e-4859.63Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834945 ID=CF834945; Name=CF834945; organism=Citrus sinensis; type=EST; length=773bp
TGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTTCATCAATGTCAAGC
TTTCGGATTACATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTG
GACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCTGTGACCGATA
TGCTGAATTTGAGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACA
GTGTGTTTTCACACTTGGCATGGGTCCAAACAGACAGAAAGTCAGGTGGT
CTTGGTGATTTGAAGTACCCACTAATTGCTGATATCACCAAATCAATTTC
AAAATCCTATGGTATTCTGATCCCTGATCAGGGAATTGCATTGAGAGGAC
TCTTTATTATTGACAAAGAAGGAGTCATCCAGCACTCAACCATTATCAAC
CTTGCCATTGGTAGGAGTGTTGACTAGACACTGAGAACACTTCAGGCCTT
GCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAGGATGGAAGC
CCGGGGACAAATCCATGAAGCCAGACCCAAAACTCAGCAAGGAGTACTTT
GCAGCTATATAAGAGGGGTTAGCATTGGAACCTCGTATGCATATCTATGT
CTATTAGGGAGGTGTAGATGAGTTTTGTTTTTCCATGTAATGTGATTTTG
CTACTTACTGTTGAGTTTTGCGGAGCAGCCTGTGGGGAATAAATGCATTG
GACTGGATTTGTCCACCTCTTTACTTCCTTTGTAATGCAGACACAACAAA
ATCTCTTGGTATTGTCCTCTTCA
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