CF834945

Overview
NameCF834945
Unique NameCF834945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11471 contig Csv1_Contig11471:353..1125. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: TSAA_HELPJ (Probable peroxiredoxin OS=Helicobacter pylori J99 GN=tsaA PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.861e-39
Identity = 86/184 (46.74%), Postives = 118/184 (64.13%), Query Frame = 2
Query:    2 DFAAEAVFDQEFIN--VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEY 547
            DF A AV     ++   +LS  +GK  VILFF+P DFTFVCPTEI AF  R  +F +    ++GVS DS   H AW  T  + GG+G + +P++ADITKSIS+ Y +L  ++ IALRG F+IDK   ++H+ I +L +GR+ D  LR + AL + +E+  EVCPAGW+ GDK MK   +   EY
Sbjct:    9 DFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLF-EEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEH-GEVCPAGWRKGDKGMKATHQGVAEY 190          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: TSAA_HELPY (Probable peroxiredoxin OS=Helicobacter pylori GN=tsaA PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 8.602e-39
Identity = 85/184 (46.20%), Postives = 118/184 (64.13%), Query Frame = 2
Query:    2 DFAAEAVFDQEFIN--VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEY 547
            DF A AV     ++   +LS  +GK   ILFF+P DFTFVCPTEI AF  R  +F++    ++GVS DS   H AW  T  + GG+G + +P++ADITKSIS+ Y +L  ++ IALRG F+IDK   ++H+ I +L +GR+ D  LR + AL + +E+  EVCPAGW+ GDK MK   +   EY
Sbjct:    9 DFKAPAVLGNNEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRVKDFQEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVTFPMVADITKSISRDYDVLF-EEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEH-GEVCPAGWRKGDKGMKATHQGVAEY 190          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: PRDX2_PIG (Peroxiredoxin-2 (Fragment) OS=Sus scrofa GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.282e-38
Identity = 75/125 (60.00%), Postives = 93/125 (74.40%), Query Frame = 2
Query:   83 LFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQY 457
            LFFYPLDFTFVCPTEI AF DR  EF +L  E+LGVS D   +HLAW+ T RK GGLG LK PL+AD+T+++S  YG+L  D+GIA RGLFIID +GV++  T+ +L +GR VD  LR +Q  QY
Sbjct:    1 LFFYPLDFTFVCPTEIIAFSDRAEEFHQLGCEVLGVSVDXQXTHLAWINTPRKEGGLGPLKIPLLADVTRNLSLDYGVLKEDEGIAYRGLFIIDGKGVLRQITVNDLPVGRXVDEALRLVQGXQY 125          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: CR29_ENTHI (Putative peroxiredoxin OS=Entamoeba histolytica PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.767e-37
Identity = 73/171 (42.69%), Postives = 115/171 (67.25%), Query Frame = 2
Query:   44 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 556
            + +++Y GK YV+L FYPLD+TFVCPTE+  + +   + +++N E++GVS DSV+ H AW + D+  GG+G L +PL++DI + IS  YG+L  + GIA RG  IID +G +++  + +  IGRS + T+R ++A+Q+  E+   VCP  WKPG  +++P P   K+Y  A
Sbjct:   64 IDINEYRGK-YVVLLFYPLDWTFVCPTEMIGYSELAGQLKEINCEVIGVSVDSVYCHQAWCEADKSKGGVGKLTFPLVSDIKRCISIKYGMLNVEAGIARRGYVIIDDKGKVRYIQMNDDGIGRSTEETIRIVKAIQFSDEH-GAVCPLNWKPGKDTIEPTPDGIKKYLTA 232          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: PRXU_EUBAC (Selenocysteine-containing peroxiredoxin prxU OS=Eubacterium acidaminophilum GN=prxU PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.052e-36
Identity = 77/179 (43.02%), Postives = 112/179 (62.57%), Query Frame = 2
Query:    2 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPD-EVCPAGWKPGDKSMKPDPKL 535
            DF     +  EF   +LS+Y+GK +V+L FYP DFTFV  TE++A  ++Y EF+KL  E+L VS DSVF H  W   +      G + +P+++D   ++   YG+  P+ G+  RG F+ID +G+IQ   ++ L +GR+V  TLR +QA Q V+E    EV P+GWKPG K++KP P L
Sbjct:   10 DFEMAGFYKGEFKTFRLSEYLGK-WVVLCFYPGDFTFVUATEVSAVAEKYPEFQKLGVEVLSVSVDSVFVHKMWNDNELSKMVEGGIPFPMLSDGGGNVGTLYGVYDPEAGVENRGRFLIDPDGIIQGYEVLILPVGRNVSETLRQIQAFQLVRETKGAEVAPSGWKPGKKTLKPGPGL 187          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_176 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.418e-35
Identity = 78/190 (41.05%), Postives = 112/190 (58.95%), Query Frame = 2
Query:    2 DFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPK----LSKEYFA 553
            +F A A+     I  N  L  Y   +  +LFF+P+DFTFVCP+EI  F   +  FEK N +I+GVS DSVF H AW  T  ++GG+G +K+P+++DI   I KSY I  P+  IALR  F+ID+  +I+H  + +L  GR++D  +R + AL +      EVCP  WK G + MK   +      K+YF+
Sbjct:   10 NFIAPAILKNGKIMNNFDLKKYSNGQITVLFFWPMDFTFVCPSEIIEFNKTFEAFEKRNVKIVGVSIDSVFVHQAWQNTFPENGGIGKIKFPMVSDIKHEIQKSYHIEHPELNIALRASFLIDENWIIRHQVVNDLPFGRNIDEMIRMIDALNF-HNKYGEVCPVNWKHGQEGMKASQEGVSSYLKKYFS 198          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: TSAA_BUCBP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_171 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.536e-35
Identity = 76/188 (40.43%), Postives = 112/188 (59.57%), Query Frame = 2
Query:    2 DFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 559
            DF A A+     I  N    ++   +  ILFF+P+DFTFVCP+EI AF    ++F+K N +++GVS DSV+ H AW  T   +G +  + + +++D+ + I +SYGI  P  G+ALR  F+IDK  +I+H TI +L  GR++  TLR + AL +  E   EVCPA WK GD  +K   +   +Y   I
Sbjct:   10 DFTASAISCNGDIINNFNFKEFTNNQTSILFFWPMDFTFVCPSEIIAFNQELSKFKKRNVKLIGVSIDSVYVHHAWRNTLSHNGQIDKINFTMVSDLKREIQRSYGIEHPQLGVALRATFLIDKNRIIRHQTINDLPFGRNISETLRMIDALHF-YEKYGEVCPANWKKGDTGIKTTQEGIHKYLEKI 196          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAI (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU182 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.193e-34
Identity = 73/186 (39.25%), Postives = 111/186 (59.68%), Query Frame = 2
Query:    2 DFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFA 553
            +F A A+     I     L  Y   +  +LFF+P+DFTFVCP+EI  F   ++EF+K N +I+GVS DSV+ H AW  T  K+GG+G + +P+++D+   I KSYGI  P+ GIALR  F+ID   +I+H  + +L  GR++   +R + AL +      EVCPA WK G++ +    +   +Y +
Sbjct:   10 NFIAPAILKNNQIVEQFDLKKYSNGQSTVLFFWPMDFTFVCPSEIIEFNKLHSEFKKRNVKIVGVSIDSVYVHQAWQNTLPKNGGIGKINFPMVSDVKHDIQKSYGIQHPNLGIALRASFLIDSNWIIRHQVVNDLPFGRNITDMIRMVDALDF-HNKFGEVCPANWKKGEEGITASSEGVSQYLS 194          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_SHIFL (Alkyl hydroperoxide reductase subunit C OS=Shigella flexneri GN=ahpC PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 67/173 (38.73%), Postives = 103/173 (59.54%), Query Frame = 2
Query:    5 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+    D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR     LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   11 FKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_SALTY (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhimurium GN=ahpC PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 68/173 (39.31%), Postives = 103/173 (59.54%), Query Frame = 2
Query:    5 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F  +A  + EFI V   D  G+ + + FFYP DFTFVCPTE+    D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR     LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   11 FKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 179          
The following BLAST results are available for this feature:
BLAST of CF834945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
TSAA_HELPJ3.861e-3946.74Probable peroxiredoxin OS=Helicobacter pylori J99 ... [more]
TSAA_HELPY8.602e-3946.20Probable peroxiredoxin OS=Helicobacter pylori GN=t... [more]
PRDX2_PIG7.282e-3860.00Peroxiredoxin-2 (Fragment) OS=Sus scrofa GN=PRDX2 ... [more]
CR29_ENTHI2.767e-3742.69Putative peroxiredoxin OS=Entamoeba histolytica PE... [more]
PRXU_EUBAC1.052e-3643.02Selenocysteine-containing peroxiredoxin prxU OS=Eu... [more]
TSAA_BUCAP4.418e-3541.05Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
TSAA_BUCBP7.536e-3540.43Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
TSAA_BUCAI2.193e-3439.25Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
AHPC_SHIFL6.602e-3138.73Alkyl hydroperoxide reductase subunit C OS=Shigell... [more]
AHPC_SALTY6.602e-3139.31Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834945 ID=CF834945; Name=CF834945; organism=Citrus sinensis; type=EST; length=773bp
TGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTTCATCAATGTCAAGC
TTTCGGATTACATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTG
GACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCTGTGACCGATA
TGCTGAATTTGAGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACA
GTGTGTTTTCACACTTGGCATGGGTCCAAACAGACAGAAAGTCAGGTGGT
CTTGGTGATTTGAAGTACCCACTAATTGCTGATATCACCAAATCAATTTC
AAAATCCTATGGTATTCTGATCCCTGATCAGGGAATTGCATTGAGAGGAC
TCTTTATTATTGACAAAGAAGGAGTCATCCAGCACTCAACCATTATCAAC
CTTGCCATTGGTAGGAGTGTTGACTAGACACTGAGAACACTTCAGGCCTT
GCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAGGATGGAAGC
CCGGGGACAAATCCATGAAGCCAGACCCAAAACTCAGCAAGGAGTACTTT
GCAGCTATATAAGAGGGGTTAGCATTGGAACCTCGTATGCATATCTATGT
CTATTAGGGAGGTGTAGATGAGTTTTGTTTTTCCATGTAATGTGATTTTG
CTACTTACTGTTGAGTTTTGCGGAGCAGCCTGTGGGGAATAAATGCATTG
GACTGGATTTGTCCACCTCTTTACTTCCTTTGTAATGCAGACACAACAAA
ATCTCTTGGTATTGTCCTCTTCA
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