CF834945

Overview
NameCF834945
Unique NameCF834945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11471 contig Csv1_Contig11471:353..1125. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_SALTI (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhi GN=ahpC PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 68/173 (39.31%), Postives = 103/173 (59.54%), Query Frame = 2
Query:    5 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F  +A  + EFI V   D  G+ + + FFYP DFTFVCPTE+    D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR     LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   11 FKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 179          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_ECOLI (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli (strain K12) GN=ahpC PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 67/173 (38.73%), Postives = 103/173 (59.54%), Query Frame = 2
Query:    5 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+    D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR     LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   11 FKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_ECOL6 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O6 GN=ahpC PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 67/173 (38.73%), Postives = 103/173 (59.54%), Query Frame = 2
Query:    5 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+    D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR     LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   11 FKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_ECO57 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O157:H7 GN=ahpC PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 67/173 (38.73%), Postives = 103/173 (59.54%), Query Frame = 2
Query:    5 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+    D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR     LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   11 FKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: YNDH_BACYN (Putative peroxiredoxin in ndh 5'region (Fragment) OS=Bacillus sp. (strain YN-1) PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.589e-30
Identity = 66/164 (40.24%), Postives = 101/164 (61.59%), Query Frame = 2
Query:   32 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            EFI V    + G+ + +L FYP DFTFVCPTE+    + YA  ++L  E+   STD+ F+H  W  +   S  +G + Y +I D ++++S+++ +L    G+A RG FIID +GV+Q + I    IGR     +  ++A QYV+ NP EVCPA W+ GD+++KP
Sbjct:    1 EFIEVSEESFKGQ-WSVLCFYPADFTFVCPTELEDLQNEYAALKELGVEVFSASTDTHFTHKGWHDS---SETIGKITYAMIGDPSQTLSRNFDVLNEVSGLADRGTFIIDPDGVVQAAEINAEGIGRDASTLVNKIKAAQYVRNNPGEVCPAKWQEGDETLKP 160          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: TDXH_THEVO (Probable peroxiredoxin OS=Thermoplasma volcanium GN=TV1123 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 63/162 (38.89%), Postives = 105/162 (64.81%), Query Frame = 2
Query:   44 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDP 529
            + LS+Y GK +V+LF +P DFT VC TE  AF +RY +F+KL  E++G+S DSVFSH+AW++  ++  G+ D+ +P+IADI K +++ Y ++    G  +RG+FIID   +++         GR+++  +R ++ALQ+  +      PA W+PG + ++P P
Sbjct:   21 ITLSNYRGK-WVLLFSHPGDFTPVCTTEFIAFTERYEDFQKLGVELIGLSIDSVFSHIAWIRDIKEHFGI-DIPFPIIADIDKEVAREYNLIDEKSGATVRGVFIIDPNQIVRWMIYYPAETGRNIEEIIRVIKALQFNWDR-KLATPANWQPGQEGIEPAP 179          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_BACSU (Alkyl hydroperoxide reductase subunit C OS=Bacillus subtilis GN=ahpC PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 68/173 (39.31%), Postives = 105/173 (60.69%), Query Frame = 2
Query:    5 FAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F A+A  + EFI+V   D  G+ + +  FYP DF+FVCPTE+    ++YA  ++L  E+  VSTD+ F H  W  +  K   +  + Y +I D +++IS+++ +L  + G+A RG FIID +GVIQ   I    IGR     +  ++A QYV++NP EVCPA W+ G +++ P
Sbjct:   11 FEAKAFKNGEFIDVTNEDLKGQ-WSVFCFYPADFSFVCPTELEDLQEQYAALKELGVEVYSVSTDTHFVHKGWHDSSEK---ISKITYAMIGDPSQTISRNFDVLDEETGLADRGTFIIDPDGVIQTVEINAGGIGRDASNLVNKVKAAQYVRQNPGEVCPAKWEEGGETLTP 179          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAES (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ahpC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28
Identity = 64/164 (39.02%), Postives = 101/164 (61.59%), Query Frame = 2
Query:   32 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            EF  V   D+ G   V+ F YP DF+FVCPTE+    ++YA+ ++L   +  VSTD+ F H AW      S  +  L+Y +I D +++I++++ +L  + G+A RG FIID +GV+Q + I    IGR     +  ++A QYV+++P EVCPA W+ G +S++P
Sbjct:   22 EFKEVTQEDFKGSWNVVCF-YPADFSFVCPTELEDLQNQYAKLQELGVNVYSVSTDTHFVHKAWHD---HSDAISKLEYSMIGDPSQTITRNFDVLDEESGLAQRGTFIIDPDGVVQAAEINADGIGRDASTLVNKIKAAQYVRQHPGEVCPAKWEEGSESLQP 181          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAEQ (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ahpC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.348e-28
Identity = 64/164 (39.02%), Postives = 101/164 (61.59%), Query Frame = 2
Query:   32 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            EF  V   D+ G   V+ F YP DF+FVCPTE+    ++YA+ ++L   +  VSTD+ F H AW      S  +  L+Y +I D +++I++++ +L  + G+A RG FIID +GV+Q + I    IGR     +  ++A QYV+++P EVCPA W+ G +S++P
Sbjct:   22 EFKEVTQEDFKGSWNVVCF-YPADFSFVCPTELEDLQNQYAKLQELGVNVYSVSTDTHFVHKAWHD---HSDAISKLEYSMIGDPSQTITRNFDVLDEETGLAQRGTFIIDPDGVVQAAEINADGIGRDASTLVNKIKAAQYVRQHPGEVCPAKWEEGSESLQP 181          
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: TDX_ENCCU (Putative thioredoxin peroxidase OS=Encephalitozoon cuniculi GN=ECU03_1190 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.067e-28
Identity = 66/170 (38.82%), Postives = 97/170 (57.06%), Query Frame = 2
Query:    2 DFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDK 511
            D   +A  D E   + L DYIGK YV+L FYPLDFTFVCPTEI  F D    F + N  +L +S DSV++H AW    R+  G+    +P++ D  + +   +G+   + G  +R   I+ K+  ++H +    AIGRSVD  +R + A+ +  EN D +CPA W+  +K
Sbjct:    8 DSKYKAFVDGEIKEISLQDYIGK-YVVLAFYPLDFTFVCPTEINRFSDLKGAFLRRNAVVLLISCDSVYTHKAWASIPREQNGVLGTAWPMVWDAKRELCNQFGLYDEENGHPMRSTVILAKDLSVRHISSNYHAIGRSVDEIIRLIDAITFNDENGD-ICPAEWRSENK 175          
The following BLAST results are available for this feature:
BLAST of CF834945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
AHPC_SALTI6.602e-3139.31Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_ECOLI6.602e-3138.73Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECOL66.602e-3138.73Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECO576.602e-3138.73Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
YNDH_BACYN5.589e-3040.24Putative peroxiredoxin in ndh 5'region (Fragment) ... [more]
TDXH_THEVO1.245e-2938.89Probable peroxiredoxin OS=Thermoplasma volcanium G... [more]
AHPC_BACSU2.124e-2939.31Alkyl hydroperoxide reductase subunit C OS=Bacillu... [more]
AHPC_STAES1.798e-2839.02Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAEQ2.348e-2839.02Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
TDX_ENCCU3.067e-2838.82Putative thioredoxin peroxidase OS=Encephalitozoon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834945 ID=CF834945; Name=CF834945; organism=Citrus sinensis; type=EST; length=773bp
TGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTTCATCAATGTCAAGC
TTTCGGATTACATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTG
GACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCTGTGACCGATA
TGCTGAATTTGAGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACA
GTGTGTTTTCACACTTGGCATGGGTCCAAACAGACAGAAAGTCAGGTGGT
CTTGGTGATTTGAAGTACCCACTAATTGCTGATATCACCAAATCAATTTC
AAAATCCTATGGTATTCTGATCCCTGATCAGGGAATTGCATTGAGAGGAC
TCTTTATTATTGACAAAGAAGGAGTCATCCAGCACTCAACCATTATCAAC
CTTGCCATTGGTAGGAGTGTTGACTAGACACTGAGAACACTTCAGGCCTT
GCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAGGATGGAAGC
CCGGGGACAAATCCATGAAGCCAGACCCAAAACTCAGCAAGGAGTACTTT
GCAGCTATATAAGAGGGGTTAGCATTGGAACCTCGTATGCATATCTATGT
CTATTAGGGAGGTGTAGATGAGTTTTGTTTTTCCATGTAATGTGATTTTG
CTACTTACTGTTGAGTTTTGCGGAGCAGCCTGTGGGGAATAAATGCATTG
GACTGGATTTGTCCACCTCTTTACTTCCTTTGTAATGCAGACACAACAAA
ATCTCTTGGTATTGTCCTCTTCA
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