CF834945

Overview
NameCF834945
Unique NameCF834945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11471 contig Csv1_Contig11471:353..1125. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: TDXH2_THEAC (Probable peroxiredoxin 2 OS=Thermoplasma acidophilum GN=Ta0954 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 63/162 (38.89%), Postives = 102/162 (62.96%), Query Frame = 2 
Query:   44 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDP 529
            V LS Y GK +V+LF +P DFT VC TE  AF +RY +F+ L  E+LG+S DSV+SH+AW++  ++  G+ ++ +P+IADI K +++ Y ++    G  +RG+FIID   +++         GR++D  +R ++ALQ+  E      PA W+PG + ++  P
Sbjct:   17 VTLSSYRGK-WVLLFSHPGDFTPVCTTEFIAFTERYKDFQALGVELLGLSIDSVYSHIAWIRDIKEHFGI-EIPFPIIADIDKEVARQYNLIDEKSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRVIKALQFNWER-KLATPANWQPGQEGIEGAP 175
[Close]
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAAW (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MW2) GN=ahpC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:    5 FAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A RG FIID +GV+Q S I    IGR        ++A QYV++NP EVCPA W+ G K+++P
Sbjct:   11 FTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHD---HSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181
[Close]
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAAS (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MSSA476) GN=ahpC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:    5 FAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A RG FIID +GV+Q S I    IGR        ++A QYV++NP EVCPA W+ G K+++P
Sbjct:   11 FTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHD---HSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181
[Close]
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAAR (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MRSA252) GN=ahpC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:    5 FAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A RG FIID +GV+Q S I    IGR        ++A QYV++NP EVCPA W+ G K+++P
Sbjct:   11 FTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHD---HSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181
[Close]
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAAN (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain N315) GN=ahpC PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:    5 FAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A RG FIID +GV+Q S I    IGR        ++A QYV++NP EVCPA W+ G K+++P
Sbjct:   11 FTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHD---HSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181
[Close]
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAAM (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ahpC PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:    5 FAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A RG FIID +GV+Q S I    IGR        ++A QYV++NP EVCPA W+ G K+++P
Sbjct:   11 FTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHD---HSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181
[Close]
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAAC (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain COL) GN=ahpC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:    5 FAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A RG FIID +GV+Q S I    IGR        ++A QYV++NP EVCPA W+ G K+++P
Sbjct:   11 FTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHD---HSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181
[Close]
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAAB (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ahpC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:    5 FAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A RG FIID +GV+Q S I    IGR        ++A QYV++NP EVCPA W+ G K+++P
Sbjct:   11 FTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHD---HSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181
[Close]
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAA8 (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain NCTC 8325) GN=ahpC PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:    5 FAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A RG FIID +GV+Q S I    IGR        ++A QYV++NP EVCPA W+ G K+++P
Sbjct:   11 FTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHD---HSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181
[Close]
BLAST of CF834945 vs. ExPASy Swiss-Prot
Match: AHPC_STAA3 (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain USA300) GN=ahpC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 69/176 (39.20%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:    5 FAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFCDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTIINLAIGRSVD*TLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 523
            F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A RG FIID +GV+Q S I    IGR        ++A QYV++NP EVCPA W+ G K+++P
Sbjct:   11 FTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHD---HSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181
The following BLAST results are available for this feature:
BLAST of CF834945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
TDXH2_THEAC4.005e-2838.89Probable peroxiredoxin 2 OS=Thermoplasma acidophil... [more]
AHPC_STAAW6.832e-2839.20Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAS6.832e-2839.20Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAR6.832e-2839.20Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAN6.832e-2839.20Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAM6.832e-2839.20Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAC6.832e-2839.20Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAB6.832e-2839.20Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAA86.832e-2839.20Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAA36.832e-2839.20Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834945 ID=CF834945; Name=CF834945; organism=Citrus sinensis; type=EST; length=773bp
TGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTTCATCAATGTCAAGC
TTTCGGATTACATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTG
GACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCTGTGACCGATA
TGCTGAATTTGAGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACA
GTGTGTTTTCACACTTGGCATGGGTCCAAACAGACAGAAAGTCAGGTGGT
CTTGGTGATTTGAAGTACCCACTAATTGCTGATATCACCAAATCAATTTC
AAAATCCTATGGTATTCTGATCCCTGATCAGGGAATTGCATTGAGAGGAC
TCTTTATTATTGACAAAGAAGGAGTCATCCAGCACTCAACCATTATCAAC
CTTGCCATTGGTAGGAGTGTTGACTAGACACTGAGAACACTTCAGGCCTT
GCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAGGATGGAAGC
CCGGGGACAAATCCATGAAGCCAGACCCAAAACTCAGCAAGGAGTACTTT
GCAGCTATATAAGAGGGGTTAGCATTGGAACCTCGTATGCATATCTATGT
CTATTAGGGAGGTGTAGATGAGTTTTGTTTTTCCATGTAATGTGATTTTG
CTACTTACTGTTGAGTTTTGCGGAGCAGCCTGTGGGGAATAAATGCATTG
GACTGGATTTGTCCACCTCTTTACTTCCTTTGTAATGCAGACACAACAAA
ATCTCTTGGTATTGTCCTCTTCA
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