CF834949

Overview
NameCF834949
Unique NameCF834949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.265e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = -1
Query:  200 RNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 406
            RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ A+E
Sbjct:   65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEE 135          
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.265e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = -1
Query:  200 RNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 406
            RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ A+E
Sbjct:   65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEE 135          
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 2.764e-13
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = -1
Query:  200 RNKFHCPIVNVDKLWSMVPQEVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 406
            RN+  CP VN+DK W++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ A+E
Sbjct:   65 RNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEE 135          
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: R27A2_ENTHI (60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = -1
Query:  200 NKFHCPIVNVDKLWSMVPQEVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 403
            NK++CP +NVD LWS+V ++V+A+       + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A +
Sbjct:   66 NKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQ 136          
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: R27A1_ENTHI (60S ribosomal protein L27a-1 OS=Entamoeba histolytica GN=rpl27a-1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.158e-13
Identity = 34/72 (47.22%), Postives = 52/72 (72.22%), Query Frame = -1
Query:  200 NKFHCPIVNVDKLWSMVPQEVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 403
            NK++CP +NVD LWS+V ++++A+       + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A +
Sbjct:   66 NKYYCPSINVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQ 136          
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: R27A3_ENTHI (60S ribosomal protein L27a-3 OS=Entamoeba histolytica GN=rpl27a-3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.372e-12
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = -1
Query:  200 NKFHCPIVNVDKLWSMVPQEV----KAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 403
            NK++CP +NVD LWS+V ++V    K   + + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A +
Sbjct:   66 NKYYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQ 136          
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: RL27A_XENLA (60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = -1
Query:  200 RNKFHCPIVNVDKLWSMVPQEVK---AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 406
            +N+  CP +N+DKLW++V ++ +   AK  +   P+ID    GY+KVLGKG LP+ QPV+VKAK  S+ A+E
Sbjct:   65 KNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK-QPVIVKAKFFSRKAEE 135          
BLAST of CF834949 vs. ExPASy Swiss-Prot
Match: RL28_YEAST (60S ribosomal protein L28 OS=Saccharomyces cerevisiae GN=RPL28 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = -1
Query:  200 FHCPIVNVDKLWSMVPQEVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTADE 397
            F  P++N+DKLW+++P++ + +    ASK+  P+ID    GY K+LGKG +P N PV+VKA+ VSK A+E
Sbjct:   68 FWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NVPVIVKARFVSKLAEE 136          
The following BLAST results are available for this feature:
BLAST of CF834949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL27A_HUMAN4.265e-1451.3960S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
RL27A_BOVIN4.265e-1451.3960S ribosomal protein L27a OS=Bos taurus GN=RPL27A... [more]
RL27A_MOUSE2.764e-1350.0060S ribosomal protein L27a OS=Mus musculus GN=Rpl2... [more]
R27A2_ENTHI4.715e-1348.6160S ribosomal protein L27a-2/4 OS=Entamoeba histol... [more]
R27A1_ENTHI6.158e-1347.2260S ribosomal protein L27a-1 OS=Entamoeba histolyt... [more]
R27A3_ENTHI1.372e-1248.6160S ribosomal protein L27a-3 OS=Entamoeba histolyt... [more]
RL27A_XENLA3.992e-1247.2260S ribosomal protein L27a OS=Xenopus laevis GN=rp... [more]
RL28_YEAST1.981e-1147.1460S ribosomal protein L28 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834949 ID=CF834949; Name=CF834949; organism=Citrus sinensis; type=EST; length=409bp
TTTTTTTTTTCCTTTAAATAGANAATCCAAATCATTCATAAACCTTATTT
GCCCTAGAGGGTGACAAGCAGAAATAACCAGAAAGGCTGAATTTGCGGTA
TCCAGGCTTTCAACAATTACAAAAAGAAGTTTGATCATTAATATCTAAAG
AAATAACAGTTGGTTGTTCAATTGAACCTTTTGGTGAGACAGGAAAAATT
TCATCGGCTGTCTTGGAAACAAGCTTGGCCTTCACCACAACGGGTTGGTT
CTCAGGCAAAACGCCCTTACCCAAAACCTTAAAGTAGCCAAACTGAGTCA
CATCGATCATTGGCACATTGTCTTTGGAAGCCTTGGCTTTGACCTCCTGA
GGTACCATCGACCAAAGCTTGTCGACGTTCACAATTGGGCAATGAAATTT
ATTACGCAG
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