CF834955

Overview
NameCF834955
Unique NameCF834955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:307..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.674e-30
Identity = 64/91 (70.33%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KFADENF  KH G G LSMAN+G  T GSQFF+  A T+WLDGKHVVFG + EGMDVVK +E  GS SG+T KPVVIA+CGQL
Sbjct:   89 GGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.396e-29
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = -1
Query:  272 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 541
            GG+SI G KF DENF+ KHTGPG+LSMANSGP T GSQFF+   KT+WLDGKHVVFG++ EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  210 GGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.396e-29
Identity = 63/91 (69.23%), Postives = 69/91 (75.82%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KF DENF  KHTGPG LSMAN+GP T GSQFF+ T  T WLDG HVVFGQ+ +GM VVK IEK+GS SG   K V IADCG+L
Sbjct:   99 GGESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.823e-29
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = -1
Query:  272 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 541
            GG+SI G KF DENF+ KHTGPG+LSMANSGP T GSQFF+   KT+WLDGKHVVFG++ EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  210 GGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.382e-29
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = -1
Query:  272 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 541
            GG+SI G KF DENF+ KHTGPG+LSMANSGP T GSQFF+   KT+WLDGKHVVFG++ EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  210 GGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.306e-29
Identity = 56/90 (62.22%), Postives = 72/90 (80.00%), Query Frame = -1
Query:  272 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 541
            GG+SI G KF DENF+ KHTGPG+LSMANSGP T GSQFF+   KT+WLDGKHVVFG++ +G+DV++ IE  GS  G+  + V+I+DCG+
Sbjct:  210 GGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.050e-29
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KFADENFVK+H  PG+LSMAN+GP T GSQFF+ T    WLDGKHVVFG++ +G+D+VK IE  GS SG T+K +VI + GQL
Sbjct:   72 GGKSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.016e-28
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF  KHTG GILSMAN+G  T GSQFF+ T KT WLD KHVVFG++VEG+DVVK IE  GS SG+T+K +++A+ G L
Sbjct:  137 GGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.633e-28
Identity = 61/91 (67.03%), Postives = 68/91 (74.73%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GGESI G KFADENF  KHTGPG+LSMANSG  T GSQFF+ T  T WLDG+HVVFG++V+GMDVV  IE  G  SG     VVIAD G+L
Sbjct:  109 GGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 199          
BLAST of CF834955 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.439e-28
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = -1
Query:  269 GGESISG*KFADENFVKKHTGPGILSMANSGPGTTGSQFFVRTAKTEWLDGKHVVFGQLVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 541
            GG+SI G KF DENF  KHTGPG LSMAN+GP T GSQFF+ T K  WLDGKHVVFG++ EGMDVV+ IE +GS +G     ++I +CGQL
Sbjct:   74 GGKSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
The following BLAST results are available for this feature:
BLAST of CF834955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPIA_DICDI3.674e-3070.33Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPIE_HUMAN1.396e-2964.44Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
CYP1_CAEEL1.396e-2969.23Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIE_PONAB1.823e-2964.44Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_MOUSE2.382e-2964.44Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PPIE_BOVIN5.306e-2962.22Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPIA_CANAL9.050e-2963.74Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
PPIA_DROME2.016e-2864.84Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
CP19D_ARATH2.633e-2867.03Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIA1_RHIOR3.439e-2863.74Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834955 ID=CF834955; Name=CF834955; organism=Citrus sinensis; type=EST; length=541bp
TTTTTTTTTTTAAAAAGGATACGGAATATAACAAGACAAGCCCCTTTTTA
TTTAAAAAGGCAGCTCATAGAAAGACATAAAAACCCTTTCATCGAGAACC
ACCACCGGAGACCCGATCCGACCCGAACAAGTAACATAGCAGGAAAATTA
GATAAAGATTAAAAGTCCTACAGACACGCCCACATAATAATAGATAACGT
AGTCAGCATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTA
TCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCT
TGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACG
TCCATCCCTTCGACGAGCTGACCGAACACAACGTGCTTCCCATCGAGCCA
CTCGGTCTTGGCCGTGCGGACGAAGAACTGAGATCCGGTGGTTCCGGGTC
CGGAATTCGCCATGGAAAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAG
TTCTCATCGGCGAATTTCTAGCCGGAGATTGATTCGCCTCC
back to top