CF835127

Overview
NameCF835127
Unique NameCF835127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5287 contig Csv1_Contig5287:380..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 68/221 (30.77%), Postives = 107/221 (48.42%), Query Frame = 2
Query:   83 TYSRATYYGSPDSLGTPT--GACGFGEYGR-TVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFI--LSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQ------EWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWK 712
            T +RAT+YG P+  G     GACGF    +         G   L+K+G GCG+CY++RC   Q C                   F   LS  A+GR+A P  + +L   G++++EF RVPC + G  + F V E S  P Y A+ + Y  G  DV+ V++ +           W  MR ++G+++ + +          ++   +G T +VANN IP++W+
Sbjct:   56 TKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKDQSCSGRSETVIITDMNYYPVAPFHFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSN-PVYFAVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRLDTNHRLQAPFSIRIRNESGKT-LVANNVIPANWR 274          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: MPAH1_HOLLA (Major pollen allergen Hol l 1 OS=Holcus lanatus PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.551e-23
Identity = 74/255 (29.02%), Postives = 126/255 (49.41%), Query Frame = 2
Query:    2 LQMALYQYYLLSVMLLLPALCYSHYTSTY------SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTD--FILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYK-GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPE--GAISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 724
            L  AL+  +L S   +       + T+TY      +++T+YG P   G     GACG+ +  +   +     G + ++K+G GCG+C++++C  P+ C                     F LS  A+G MA   +  +L S G + ++FRRV C Y  G    F V + S  P+YLA+ + Y+ G  DV+AV+I ++   +W+ ++ ++GAV+ + +P +  G  ++R+   G    T   A + IP  WKA  A
Sbjct:   11 LVAALFAVFLGSAHGIAKVPPGPNITATYGDEWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKDGRGCGSCFEIKCTKPESCSGEPVTVHITDDNEEPIAPYHFDLSGHAFGSMAKKGEEQKLRSAGELELKFRRVKCKYPDGTKPTFHVEKGSN-PNYLALLVKYIDGDGDVVAVDIKEKGKDKWIELKESWGAVWRVDTPDKLTGPFTVRYTTEGG---TKGEAEDVIPEGWKADTA 261          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.551e-23
Identity = 67/218 (30.73%), Postives = 105/218 (48.17%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGR-TVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXX--KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQ------EWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDW 709
            +RAT+YG+P   G     GACGF    +   +     G   ++K+G GCG+CYQ+RC     C                  +  F LS  A+G MA P  + +L   G+++++FRRVPC Y G  + F V E S  P Y A+ + Y     DV+ V++ +           W  MR ++G+++ + S          ++   +G T +VANN IP++W
Sbjct:   47 ARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPSCSGNIETVIITDMNYYPVARYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSN-PVYFAVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIWRLDSNHRLQAPFSLRIRSDSGKT-LVANNVIPANW 262          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 77/249 (30.92%), Postives = 126/249 (50.60%), Query Frame = 2
Query:    8 MALYQYYLLSVMLLLPALCYSHYTSTYSR-----ATYYGSPDSLGTPTGACGFGEYGRTVN-DANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK------TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDI-SSPPEGAISLRF-QVSGSAGLTWVVANNAIPSDW 709
            + ++ + L+S     P L +S+     +R     AT+YGS +  G+  GACG+G         A V  VS  L+K G GCGACY+VRC    +C                       T F LS  A+G MA+P  +  + + G++N+ +RR  C Y+G N+ F V+  S   ++L++ I Y  G+ D+ ++ I Q   +EW++M+  +GA + I   P +G  S++   +S +  L+   A + IPS+W
Sbjct:   11 LCVFLHLLISGSGSTPPLTHSNQQVAATRWLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGST-DYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANWCIVEGPLKGPFSVKLTTLSNNKTLS---ATDVIPSNW 255          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.324e-22
Identity = 70/220 (31.82%), Postives = 117/220 (53.18%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGRTVNDANVAGVSR-----LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTD--FILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYK-GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWK 712
            +RAT+YG P+  G P   GACG     + VN    +G++      ++K+G GCG+CY+VRCK    C                     F LS +A+G +A P  + ++   G+++VEFRRV C Y  G  + F + +    P+YLA+ + YVA   D++ +EI  +   EW  M+ ++GA++  D +   +G  S+R  ++  +G   V+A + IP++W+
Sbjct:   46 ARATWYGQPNGAGAPDNGGACGI----KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCN-PNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIR--LTSESGKK-VIAKDVIPANWR 257          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.324e-22
Identity = 71/222 (31.98%), Postives = 116/222 (52.25%), Query Frame = 2
Query:   95 ATYYGSPDSLGTPTGACGF-GEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK-----TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQ----EWVAMRRAFGAVFDISSPP---EGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            AT+YG  +  GT  GACG+ G+ G+   N    AG   ++++G GCG+CYQV+C     C                        F LS  A+G MA P +  +L + G + V++ RVPC ++G ++ F+V   S   +YLA+ +    G  D+ AV++ Q         W AM++++GAV+  +S P   +  +S+R  ++  +G T +VA+N IP+ W+ G
Sbjct:   43 ATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPSCSGKPVTVVLTDLCPGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSN-QYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNSGPAPLQAPMSIR--LTSGSGRT-LVASNVIPAGWQPG 260          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB9_ORYSJ (Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXPB9 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.729e-22
Identity = 67/219 (30.59%), Postives = 110/219 (50.23%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGE-----YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYK-GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDW 709
            +RAT+YG P   G+    GACG        Y   ++  NV     ++K+G GCG+CY+V+C+ P  C                 +   F  S +A+G MA P K  EL   G+++++FRRV C Y  G  + F V + S  P+YLA+ + +VA   DV+ +++ +     W  M+ ++GA++  D ++P +   S+R        L   +A + IP +W
Sbjct:   46 ARATWYGQPYGSGSTDNGGACGIKNVNLPPYNGMISCGNVP----IFKDGRGCGSCYEVKCEQPAACSKQPVTVFITDMNYEPISAYHFDFSGKAFGAMACPGKETELRKAGIIDMQFRRVRCKYPGGQKVTFHVEKGSN-PNYLAVLVKFVADDGDVIQMDLQEAGLPAWRPMKLSWGAIWRMDTATPLKAPFSIRVTTESGKSL---IAKDVIPVNW 256          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: MPAP1_PHAAQ (Major pollen allergen Pha a 1 OS=Phalaris aquatica PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22
Identity = 64/217 (29.49%), Postives = 109/217 (50.23%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTD--FILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYK-GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPE--GAISLRFQVSGSAGLTWVVANNAIPSDWKA 715
            +++T+YG P   G     GACG+ +  +   N     G + ++K+G GCG+C++++C  P+ C                     F LS  A+G MA   +   +   G + ++FRRV C Y  G    F V + S  P+YLA+ + YV G  DV+AV+I ++   +W+ ++ ++GA++ I +P +  G  ++R+   G    T     + IP  WKA
Sbjct:   50 AKSTWYGKPTGAGPKDNGGACGYKDVDKAPFNGMTGCGNTPIFKDGRGCGSCFELKCSKPESCSGEPITVHITDDNEEPIAPYHFDLSGHAFGSMAKKGEEENVRGAGELELQFRRVKCKYPDGTKPTFHVEKGSN-PNYLALLVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGG---TKAEFEDVIPEGWKA 262          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: MPAL1_LOLPR (Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 64/216 (29.63%), Postives = 106/216 (49.07%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTD--FILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPE--GAISLRFQVSGSAGLTWVVANNAIPSDWKA 715
            +++T+YG P   G     GACG+    +   N     G + ++K+G GCG+C++++C  P+ C                     F LS  A+G MA   +   + S G + ++FRRV C Y          E +  P+YLAI + YV G  DV+AV+I ++   +W+ ++ ++GAV+ I +P +  G  ++R+   G    T     + IP  WKA
Sbjct:   44 AKSTWYGKPTGAGPKDNGGACGYKNVDKAPFNGMTGCGNTPIFKDGRGCGSCFEIKCTKPESCSGEAVTVTITDDNEEPIAPYHFDLSGHAFGSMAKKGEEQNVRSAGELELQFRRVKCKYPDDTKPTFHVEKASNPNYLAILVKYVDGDGDVVAVDIKEKGKDKWIELKESWGAVWRIDTPDKLTGPFTVRYTTEGG---TKSEFEDVIPEGWKA 256          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 70/220 (31.82%), Postives = 117/220 (53.18%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGRTVNDANVAGVSR-----LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTD--FILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWY-KGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWK 712
            +RAT+YG P+  G P   GACG     + VN    +G++      ++K+G GCG+CY+VRCK    C                     F LS +A+G +A P  + +L   G+++VEFRRV C Y  G  + F + E    P+Y+A+ + +VA   D++ +EI  +   EW  M+ ++GA++  D +   +G  S+R  ++  +G   V+A + IP++W+
Sbjct:   46 ARATWYGQPNGAGAPDNGGACGI----KNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVFITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHI-EKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIR--LTSESGKK-VIAKDIIPANWR 257          
The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
EXPB4_ORYSJ1.198e-2330.77Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAH1_HOLLA4.551e-2329.02Major pollen allergen Hol l 1 OS=Holcus lanatus PE... [more]
EXPB6_ORYSJ4.551e-2330.73Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB1_ARATH7.762e-2330.92Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]
EXPB1_MAIZE1.324e-2231.82Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]
EXB14_ORYSJ1.324e-2231.98Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXPB9_ORYSJ1.729e-2230.59Expansin-B9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
MPAP1_PHAAQ5.031e-2229.49Major pollen allergen Pha a 1 OS=Phalaris aquatica... [more]
MPAL1_LOLPR6.571e-2229.63Pollen allergen Lol p 1 OS=Lolium perenne PE=1 SV=... [more]
EXPB9_MAIZE6.571e-2231.82Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bp
TTTGCAAATGGCGTTATATCAATACTACCTTCTTTCCGTCATGCTGCTTT
TGCCTGCATTGTGTTACTCTCATTACACATCCACATATTCTAGAGCTACA
TACTATGGTAGCCCTGATAGTTTAGGGACACCAACTGGTGCTTGCGGGTT
TGGTGAATATGGAAGAACTGTAAATGATGCTAACGTGGCCGGTGTGTCGA
GGCTTTGGAAAAATGGAACTGGTTGTGGAGCTTGCTATCAAGTCAGGTGC
AAGGTACCACAACTTTGCACAGATTATGGGGTGTACGTGGTGGTGACTGA
CTACGGTGAAGGAGACAAAACAGACTTCATCCTCAGCCCGCGCGCATATG
GAAGAATGGCACTTCCAGATAAGTCAGCAGAGCTCTATTCTTATGGTGTG
GTCAACGTTGAATTCCGGAGAGTCCCTTGCTGGTACAAAGGCTACAACCT
TCAGTTCAAGGTCCATGAAAACAGCAGGTACCCACATTACTTGGCCATAG
CCATTCTGTACGTAGCTGGCCAAAATGATGTCCTAGCAGTTGAAATATGG
CAGGAGGATTATCAAGAATGGGTGGCAATGAGAAGGGCTTTCGGTGCAGT
ATTTGACATCTCTAGTCCACCAGAAGGAGCAATTAGTTTGAGGTTTCAAG
TGAGTGGCAGCGCGGGGCTCACATGGGTTGTGGCAAACAATGCTATTCCT
AGCGATTGGAAAGCTGGCGTTGCTT
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