CF835127

Overview
NameCF835127
Unique NameCF835127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5287 contig Csv1_Contig5287:380..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22
Identity = 73/243 (30.04%), Postives = 122/243 (50.21%), Query Frame = 2
Query:   29 LLSVMLLLPALCYSHYTSTY--SRATYYGSPDSLGTPT--GACGFGEYGR-TVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXX--KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ-----EDYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKA 715
            LLSV+          YT+ +  ++AT+YG P+  G     GACGF    +         G   L+++G GCGACYQ+RC     C                  +  F LS  A+G MA P  + +L   G+++++FRRVPC+++G  + F V   S  P YLA+ + +      V+ +++ +     +  + W  MRR++G+++  D +   +G  SLR  +   +G T V+A+  IP++W+A
Sbjct:   12 LLSVLATYGFAAGVVYTNDWLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPSCSGQPRTVIITDMNYYPVARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGSN-PVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIWRLDANHRLQGPFSLR--MVSESGQT-VIAHQVIPANWRA 250          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 69/218 (31.65%), Postives = 107/218 (49.08%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGRTVNDANVAGVSR-----LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTD--FILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDY--QEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDW 709
            ++AT+YG P+  G     GACGF    + VN     G++      L+K G GCG+CY+VRC     C                 +   F LS  A+GR+A P ++ +L   G+++V+F RVPC + G  + F V E S  P YLA+ + Y  G  DV  V++ +       W  MR ++G+V+ + S          ++   +G T +VA + IP +W
Sbjct:   51 AKATWYGQPNGAGAADNGGACGF----KKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPACSGNAQTVAITDMNYFPLSQYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSS-PVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVWRLDSNHRLRAPFSIRIRSDSGKT-LVAPDVIPLNW 262          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXLA4_ORYSJ (Expansin-like A4 OS=Oryza sativa subsp. japonica GN=EXLA4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.497e-21
Identity = 78/231 (33.77%), Postives = 109/231 (47.19%), Query Frame = 2
Query:  122 LGTPT-------GACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTD------------FILSPRAYGRMALPDKSA-ELYSYGVVNVEFRRVPCWYK-GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQED--------YQEWVAMRRAFGA--VFDISSPPEGAISLRFQVSGSAGLTWVVAN-NAIPSDWKAG 718
            L TPT       GACGFG     +N A V   + L+++G  CGACYQ+RC+  +LC                + +            F ++  A+  MA    SA EL     + V+FRR+PC Y+    L  +V E SR P +LAI  LY  GQ D+ AVEI Q +        Y  W  M R  GA  V+  S  P G + LR  V+  +G  W+ ++   +P+DW+ G
Sbjct:   48 LPTPTHAAHLTGGACGFGAAPMELNVAAVT--ADLFRHGHACGACYQLRCRDRRLCGEDGVKVVVADMAKQPEQEGEMNRTAGGSLQFRITEDAFAAMAKQGVSAHELTRQRTLEVDFRRIPCEYRESRRLAVRVEEASRNPTHLAIRFLYQGGQTDIAAVEIAQANATPPSSSYYSSWRYMTRRDGAPGVWTTSRAPVGPLRLRVVVTAGSGGKWLRSDGEVLPADWRPG 276          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.261e-21
Identity = 71/215 (33.02%), Postives = 108/215 (50.23%), Query Frame = 2
Query:   95 ATYYGSPDSLGTPTGACGFGEYGRTVN-DANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXX-----KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFD-ISSPPEGAISLRF-QVSGSAGLTWVVANNAIPSDWK 712
            AT+YG  +  G+  GACG+G     V   A V  VS  L+K+G GCGACY+V+C    +C                     +T F LS  A+ RMA+      L   G ++V +RR  C Y G N+ F+V+E S    +L++ + +  GQ D+ +++I Q +  EW+ M+  +GA +  +  P  G  S+R   +S    LT   A + IP +WK
Sbjct:   53 ATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDECPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGST-NFWLSLLVEFEDGQGDIGSMQIKQANSVEWLDMKHVWGATWCLVRGPLVGPFSVRLTTLSAQKALT---ARDVIPRNWK 263          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 61/219 (27.85%), Postives = 109/219 (49.77%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 724
            ++AT+YG P   G     G CG+ +  +   N     G   ++K+G GCG+C++++C  P  C                     F L+  A+G MA   +  +L   G+++++FRRV C Y G  + F + +    P+YLA+ + YV G  D++AV+I ++    +  ++ ++GA++  D   P +G I+++    G    T  V ++ IP+ WK   A
Sbjct:   52 AKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY-GSKVTFHLEKGCN-PNYLALLVKYVDGDGDIVAVDIKEKGSDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGG---TKTVYDDVIPAGWKPNTA 265          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 64/229 (27.95%), Postives = 114/229 (49.78%), Query Frame = 2
Query:   77 TSTY------SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 724
            T+TY      ++AT+YG P   G     G CG+ +  +   N     G   ++K+G GCG+C++++C  P  C                     F L+  A+G MA   +  +L   G+++++FRRV C Y    + F + E    P+YLA+ + YV G  D++AV++ ++    +  ++ ++GA++  D   P +G +++R    G    T  V ++ IP++WKA  A
Sbjct:   43 TATYGKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDS-KVTFHL-EKGCGPNYLALLVKYVDGDGDIVAVDVKEKGSDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGG---TKSVYDDVIPANWKANTA 266          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 65/213 (30.52%), Postives = 104/213 (48.83%), Query Frame = 2
Query:   95 ATYYGSPDSLGTPTGACGFGEYGRTVN-DANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXX-----KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDIS-SPPEGAISLRFQVSGSAGLTWVVANNAIPSDW 709
            AT+YGS D  G+  GACG+G     V     V  VS  L+K G GCGACY+VRC    +C                     +T F LS  A+ R+A+     +L + G ++V +RR  C Y G N+ F V+E S    +L++ + +  G  D+ ++++ Q +  +W  M+  +GA + ++  P  G  S+R     +     + A + IP +W
Sbjct:   50 ATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCLDASICSRRAVTVIVTDECPGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGST-TFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATWSLTPGPLVGPFSVRLTTLTTR--QTLSAQDVIPKNW 259          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.987e-19
Identity = 67/232 (28.88%), Postives = 109/232 (46.98%), Query Frame = 2
Query:   95 ATYYGSPDSLGTPTGACGFGEYG---RTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK--------------TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIW---QEDYQEWVAMRRAFGAVFDISSPP--EGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 724
            AT+YG P+  G+  GACG+ +Y       +    AG   ++ +G GCG+CY+V C   + C                                 F +S  A+G MA P ++ +L   G++ +++ RV C + G  L F V   S  P+YLA+ + Y    +D+ AV+I          W+ M++++GAV+ ++S    +G  S+R   S        VA+NAIP+ W  G+A
Sbjct:   44 ATWYGDPNGAGSEGGACGY-QYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEACSGIPVTVVITDQGPGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTFVVDSGSN-PNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVWRLNSGSALQGPFSVRLTFSSG---QMFVASNAIPAGWNPGMA 270          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 63/214 (29.44%), Postives = 98/214 (45.79%), Query Frame = 2
Query:   98 TYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR----LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK-----TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWK 712
            T+YG P   G+  GACG+G      N    A VS     L+ NG GCG CYQV C     C                          LS +A G +A P ++ +L S GV+ V ++R  C Y+G N+ F++   +  P+Y++  + Y  G  D+  VEI Q     +++M+    AV+ ++S          +++       +VA N IP++WK
Sbjct:   39 TWYGEPFGAGSTGGACGYGS--AVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGAN-PYYISFVVEYENGDGDLSNVEI-QPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVAYNVIPANWK 248          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 78/244 (31.97%), Postives = 117/244 (47.95%), Query Frame = 2
Query:   35 SVMLLLPALCY------SHYTSTYS-RATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKVP-QLCXXXXXXXXXXXXXXXXKT------DFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +++LL  A C+      + Y S  S  AT+YG  D+ GT  GACG+G    T    N A +S  L+ +G  CG+CY++RC    Q C                         +   PR +  MA P      +Y  G+V V +RRVPC  KG  ++F ++ +S   ++  + +  VAG  DV +V I +     W  M R +G  +  +S  +G  SL FQV+ S G T V +NN +P+ W+ G
Sbjct:    7 ALLLLFSAFCFLARRAAADYGSWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKG-GIRFTINGHS---YFNLVLVTNVAGPGDVQSVSI-KGSSTGWQPMSRNWGQNWQSNSYLDGQ-SLSFQVAVSDGRT-VTSNNVVPAGWQFG 243          
The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
EXPB2_ORYSJ6.571e-2230.04Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB8_ORYSJ1.121e-2131.65Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXLA4_ORYSJ2.497e-2133.77Expansin-like A4 OS=Oryza sativa subsp. japonica G... [more]
EXB17_ORYSJ3.261e-2133.02Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_MAIZE9.489e-2127.85Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXB10_MAIZE1.239e-2027.95Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXB16_ORYSJ8.033e-2030.52Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB12_ORYSJ3.987e-1928.88Expansin-B12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB4_ARATH3.375e-1829.44Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 ... [more]
EXPA2_ORYSJ3.375e-1831.97Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bp
TTTGCAAATGGCGTTATATCAATACTACCTTCTTTCCGTCATGCTGCTTT
TGCCTGCATTGTGTTACTCTCATTACACATCCACATATTCTAGAGCTACA
TACTATGGTAGCCCTGATAGTTTAGGGACACCAACTGGTGCTTGCGGGTT
TGGTGAATATGGAAGAACTGTAAATGATGCTAACGTGGCCGGTGTGTCGA
GGCTTTGGAAAAATGGAACTGGTTGTGGAGCTTGCTATCAAGTCAGGTGC
AAGGTACCACAACTTTGCACAGATTATGGGGTGTACGTGGTGGTGACTGA
CTACGGTGAAGGAGACAAAACAGACTTCATCCTCAGCCCGCGCGCATATG
GAAGAATGGCACTTCCAGATAAGTCAGCAGAGCTCTATTCTTATGGTGTG
GTCAACGTTGAATTCCGGAGAGTCCCTTGCTGGTACAAAGGCTACAACCT
TCAGTTCAAGGTCCATGAAAACAGCAGGTACCCACATTACTTGGCCATAG
CCATTCTGTACGTAGCTGGCCAAAATGATGTCCTAGCAGTTGAAATATGG
CAGGAGGATTATCAAGAATGGGTGGCAATGAGAAGGGCTTTCGGTGCAGT
ATTTGACATCTCTAGTCCACCAGAAGGAGCAATTAGTTTGAGGTTTCAAG
TGAGTGGCAGCGCGGGGCTCACATGGGTTGTGGCAAACAATGCTATTCCT
AGCGATTGGAAAGCTGGCGTTGCTT
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