CF835127
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 6.571e-22 Identity = 73/243 (30.04%), Postives = 122/243 (50.21%), Query Frame = 2 Query: 29 LLSVMLLLPALCYSHYTSTY--SRATYYGSPDSLGTPT--GACGFGEYGR-TVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXX--KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQ-----EDYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKA 715 LLSV+ YT+ + ++AT+YG P+ G GACGF + G L+++G GCGACYQ+RC C + F LS A+G MA P + +L G+++++FRRVPC+++G + F V S P YLA+ + + V+ +++ + + + W MRR++G+++ D + +G SLR + +G T V+A+ IP++W+A Sbjct: 12 LLSVLATYGFAAGVVYTNDWLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPSCSGQPRTVIITDMNYYPVARYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGSN-PVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIWRLDANHRLQGPFSLR--MVSESGQT-VIAHQVIPANWRA 250
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB8_ORYSJ (Expansin-B8 OS=Oryza sativa subsp. japonica GN=EXPB8 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21 Identity = 69/218 (31.65%), Postives = 107/218 (49.08%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPT--GACGFGEYGRTVNDANVAGVSR-----LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTD--FILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDY--QEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDW 709 ++AT+YG P+ G GACGF + VN G++ L+K G GCG+CY+VRC C + F LS A+GR+A P ++ +L G+++V+F RVPC + G + F V E S P YLA+ + Y G DV V++ + W MR ++G+V+ + S ++ +G T +VA + IP +W Sbjct: 51 AKATWYGQPNGAGAADNGGACGF----KKVNQYPFMGMTSCGNQPLYKGGKGCGSCYRVRCNRNPACSGNAQTVAITDMNYFPLSQYHFDLSGIAFGRLAKPGRADDLRRAGIIDVQFARVPCEFPGLKVGFHVEEGSS-PVYLAVLVEYENGDGDVAQVDLKEAGAGGGRWTPMRESWGSVWRLDSNHRLRAPFSIRIRSDSGKT-LVAPDVIPLNW 262
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXLA4_ORYSJ (Expansin-like A4 OS=Oryza sativa subsp. japonica GN=EXLA4 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.497e-21 Identity = 78/231 (33.77%), Postives = 109/231 (47.19%), Query Frame = 2 Query: 122 LGTPT-------GACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTD------------FILSPRAYGRMALPDKSA-ELYSYGVVNVEFRRVPCWYK-GYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQED--------YQEWVAMRRAFGA--VFDISSPPEGAISLRFQVSGSAGLTWVVAN-NAIPSDWKAG 718 L TPT GACGFG +N A V + L+++G CGACYQ+RC+ +LC + + F ++ A+ MA SA EL + V+FRR+PC Y+ L +V E SR P +LAI LY GQ D+ AVEI Q + Y W M R GA V+ S P G + LR V+ +G W+ ++ +P+DW+ G Sbjct: 48 LPTPTHAAHLTGGACGFGAAPMELNVAAVT--ADLFRHGHACGACYQLRCRDRRLCGEDGVKVVVADMAKQPEQEGEMNRTAGGSLQFRITEDAFAAMAKQGVSAHELTRQRTLEVDFRRIPCEYRESRRLAVRVEEASRNPTHLAIRFLYQGGQTDIAAVEIAQANATPPSSSYYSSWRYMTRRDGAPGVWTTSRAPVGPLRLRVVVTAGSGGKWLRSDGEVLPADWRPG 276
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.261e-21 Identity = 71/215 (33.02%), Postives = 108/215 (50.23%), Query Frame = 2 Query: 95 ATYYGSPDSLGTPTGACGFGEYGRTVN-DANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXX-----KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFD-ISSPPEGAISLRF-QVSGSAGLTWVVANNAIPSDWK 712 AT+YG + G+ GACG+G V A V VS L+K+G GCGACY+V+C +C +T F LS A+ RMA+ L G ++V +RR C Y G N+ F+V+E S +L++ + + GQ D+ +++I Q + EW+ M+ +GA + + P G S+R +S LT A + IP +WK Sbjct: 53 ATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCLDHGICSRRAVTVIVTDECPGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGST-NFWLSLLVEFEDGQGDIGSMQIKQANSVEWLDMKHVWGATWCLVRGPLVGPFSVRLTTLSAQKALT---ARDVIPRNWK 263
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21 Identity = 61/219 (27.85%), Postives = 109/219 (49.77%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 724 ++AT+YG P G G CG+ + + N G ++K+G GCG+C++++C P C F L+ A+G MA + +L G+++++FRRV C Y G + F + + P+YLA+ + YV G D++AV+I ++ + ++ ++GA++ D P +G I+++ G T V ++ IP+ WK A Sbjct: 52 AKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKCDKPAECSGKPVVVYITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKY-GSKVTFHLEKGCN-PNYLALLVKYVDGDGDIVAVDIKEKGSDTYEPLKHSWGAIWRKDSDKPIKGPITVQLTTEGG---TKTVYDDVIPAGWKPNTA 265
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20 Identity = 64/229 (27.95%), Postives = 114/229 (49.78%), Query Frame = 2 Query: 77 TSTY------SRATYYGSPDSLGTPT--GACGFGEYGRT-VNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT--DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVF--DISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 724 T+TY ++AT+YG P G G CG+ + + N G ++K+G GCG+C++++C P C F L+ A+G MA + +L G+++++FRRV C Y + F + E P+YLA+ + YV G D++AV++ ++ + ++ ++GA++ D P +G +++R G T V ++ IP++WKA A Sbjct: 43 TATYGKDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKCDKPVECSGKPVVVHITDMNYEPIAAYHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDS-KVTFHL-EKGCGPNYLALLVKYVDGDGDIVAVDVKEKGSDTYEPLKHSWGAIWRKDSDKPLKGPLTVRLTTEGG---TKSVYDDVIPANWKANTA 266
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20 Identity = 65/213 (30.52%), Postives = 104/213 (48.83%), Query Frame = 2 Query: 95 ATYYGSPDSLGTPTGACGFGEYGRTVN-DANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXX-----KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDIS-SPPEGAISLRFQVSGSAGLTWVVANNAIPSDW 709 AT+YGS D G+ GACG+G V V VS L+K G GCGACY+VRC +C +T F LS A+ R+A+ +L + G ++V +RR C Y G N+ F V+E S +L++ + + G D+ ++++ Q + +W M+ +GA + ++ P G S+R + + A + IP +W Sbjct: 50 ATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCLDASICSRRAVTVIVTDECPGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGST-TFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATWSLTPGPLVGPFSVRLTTLTTR--QTLSAQDVIPKNW 259
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 3.987e-19 Identity = 67/232 (28.88%), Postives = 109/232 (46.98%), Query Frame = 2 Query: 95 ATYYGSPDSLGTPTGACGFGEYG---RTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK--------------TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIW---QEDYQEWVAMRRAFGAVFDISSPP--EGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 724 AT+YG P+ G+ GACG+ +Y + AG ++ +G GCG+CY+V C + C F +S A+G MA P ++ +L G++ +++ RV C + G L F V S P+YLA+ + Y +D+ AV+I W+ M++++GAV+ ++S +G S+R S VA+NAIP+ W G+A Sbjct: 44 ATWYGDPNGAGSEGGACGY-QYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEACSGIPVTVVITDQGPGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTFVVDSGSN-PNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVWRLNSGSALQGPFSVRLTFSSG---QMFVASNAIPAGWNPGMA 270
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB4_ARATH (Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18 Identity = 63/214 (29.44%), Postives = 98/214 (45.79%), Query Frame = 2 Query: 98 TYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR----LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK-----TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWK 712 T+YG P G+ GACG+G N A VS L+ NG GCG CYQV C C LS +A G +A P ++ +L S GV+ V ++R C Y+G N+ F++ + P+Y++ + Y G D+ VEI Q +++M+ AV+ ++S +++ +VA N IP++WK Sbjct: 39 TWYGEPFGAGSTGGACGYGS--AVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGAN-PYYISFVVEYENGDGDLSNVEI-QPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVAYNVIPANWK 248
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18 Identity = 78/244 (31.97%), Postives = 117/244 (47.95%), Query Frame = 2 Query: 35 SVMLLLPALCY------SHYTSTYS-RATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKVP-QLCXXXXXXXXXXXXXXXXKT------DFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 +++LL A C+ + Y S S AT+YG D+ GT GACG+G T N A +S L+ +G CG+CY++RC Q C + PR + MA P +Y G+V V +RRVPC KG ++F ++ +S ++ + + VAG DV +V I + W M R +G + +S +G SL FQV+ S G T V +NN +P+ W+ G Sbjct: 7 ALLLLFSAFCFLARRAAADYGSWQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKG-GIRFTINGHS---YFNLVLVTNVAGPGDVQSVSI-KGSSTGWQPMSRNWGQNWQSNSYLDGQ-SLSFQVAVSDGRT-VTSNNVVPAGWQFG 243 The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bpback to top |