CF835127

Overview
NameCF835127
Unique NameCF835127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5287 contig Csv1_Contig5287:380..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 66/222 (29.73%), Postives = 104/222 (46.85%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKVP----------QLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            + AT+YG  D+ GT  GACG+G         N A +S  L+ NG  CGAC++VRC              +                    +   PRA+  M+ P  +   L+  G+V V +RRV C  KG  ++F ++ +S   ++  + +  V G  DV AV +  E    W A+ R +G  +  ++  +G  +L F+V+   G + VV+NNA+P  W  G
Sbjct:   67 AHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKG-GIRFTINGHS---YFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQ-ALSFRVTTGDGRS-VVSNNAVPRGWSFG 282          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 63/222 (28.38%), Postives = 106/222 (47.75%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTD-------FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            + AT+YG  D+ GT  G CG+G+ Y +     N A  + L+ +G  CG CY++ C   + PQ C                  D       +   PR +  MA P  +   +YS G++ V ++RVPC  KG  ++F +   + + ++  + +  VA    + +++I   +  +W+ M R +GA +   S   G  +L F+V+   G T +V  N +PS WK G
Sbjct:   37 AHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKG-GVRFTI---NGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQ-TLSFRVTNMDGQT-LVFKNIVPSGWKFG 252          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 61/222 (27.48%), Postives = 104/222 (46.85%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTD-------FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            + AT+YG  D+ GT  GACG+G  Y +     N A  + L+ +G  CG CY++ C   + PQ C                  +       +   PR +  MA P  +   +YS G++ V ++RVPC  KG  L+F +   + + ++  + +  VA    + ++E+   +  +W+ M R +GA +   +   G   L F+V+ +   T +V  N +P  WK G
Sbjct:   42 AHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKG-GLRFTI---NGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQ-GLSFRVTNTDDQT-LVFTNVVPPGWKFG 257          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 62/222 (27.93%), Postives = 106/222 (47.75%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTD-------FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            + AT+YG  D+ GT  GACG+G+ Y +     N A  + L+ +G  CG CY++ C   + PQ C                  D       +   PR +  MA P  +   +Y  G++ V ++RVPC  KG  ++F +   + + ++  + +  VA    + ++++   +  +W+ M R +GA +   S   G + L F+V+   G T +V  N +PS WK G
Sbjct:   55 AHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKG-GVRFTI---NGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQM-LSFRVTNMDGQT-LVFRNIVPSGWKFG 270          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB5_ARATH (Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 64/233 (27.47%), Postives = 106/233 (45.49%), Query Frame = 2
Query:   62 CYSHYTSTYSRA--TYYGSPDSLGTPTGACGFGE------YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK--TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISS--PPEGAISLRF--QVSGSAGLTWVVANNAIPSDWKAG 718
            CY H  + ++ A  T+YG  +  GT  GACG+G+      Y   V+    AG   L+K+G GCGACY+++C  P                   K    F LS +A+G +A   K  +L + G + V ++R  C +    +   V   +  P+Y++ A+ +  G  +   +E+ Q    +++ M     AV+ +S   P +G  ++R    VSG      ++A   IP  W  G
Sbjct:   26 CYCHNKTHWNTAGITWYGDREGPGTTGGACGYGDAVAKHPYRCMVS----AGGPSLFKDGKGCGACYRLKCDHPLCTKKPIKVMISDECPGCTKESVHFDLSGKAFGALAKRGKGDQLRNLGELKVSYKRACCKHPKTMIAIHVDAGAN-PYYMSFAVKFANGDGNFACIEV-QPAGGQYMKMEEMRSAVWRLSPGVPLKGPFNIRLTSAVSGKK----IIAKGVIPEKWSPG 248          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 62/221 (28.05%), Postives = 104/221 (47.06%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRC---------KVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            + AT+YG  D+ GT  GACG+G         N A +S  L+ NG  CG+C++++C           P +                    +   PR +  +A+P   S   Y  G+V V +RR+PC  KG  ++F +   + + ++  + +  VAG  DV+ V +   + Q W+ + R +G  +  ++   G  SL F+V  S G +   +NN  PS+W+ G
Sbjct:   35 AHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKG-GIRFTI---NGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQ-WLDLSRNWGQNWQSNALLVGQ-SLSFRVKTSDGRS-STSNNIAPSNWQFG 248          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 74/240 (30.83%), Postives = 110/240 (45.83%), Query Frame = 2
Query:   26 YLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCK------VP-QLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +LL +     A  Y  + S +  AT+YG  D+ GT  GACG+G         N A +S  L+ +G  CG+CY++RC       +P  +                    +   PR +  MA P       Y  G+V V FRRVPC  KG  ++F V+ +S   ++  + +  VAG  DV +V I +     W  M R +G  +  ++  +G  SL FQV+ S G T V +NN     W+ G
Sbjct:    8 FLLFLARQASAAGYGGWQSAH--ATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKG-GVRFTVNGHS---YFNLVLVTNVAGAGDVRSVSI-KGSRTGWQPMSRNWGQNWQSNAFLDGQ-SLSFQVTASDGRT-VTSNNVAHPGWQFG 238          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 74/240 (30.83%), Postives = 110/240 (45.83%), Query Frame = 2
Query:   26 YLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCK------VP-QLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +LL +     A  Y  + S +  AT+YG  D+ GT  GACG+G         N A +S  L+ +G  CG+CY++RC       +P  +                    +   PR +  MA P       Y  G+V V FRRVPC  KG  ++F V+ +S   ++  + +  VAG  DV +V I +     W  M R +G  +  ++  +G  SL FQV+ S G T V +NN     W+ G
Sbjct:    8 FLLFLARQASAAGYGGWQSAH--ATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKG-GVRFTVNGHS---YFNLVLVTNVAGAGDVRSVSI-KGSRTGWQPMSRNWGQNWQSNAFLDGQ-SLSFQVTASDGRT-VTSNNVAHPGWQFG 238          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 61/222 (27.48%), Postives = 105/222 (47.30%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTD-------FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            + AT+YG  D+ GT  GACG+ + Y +     N A  + L+ +G  CG CY++ C   + PQ C                  +       +   PR +  MA P  +   +Y  G++ V ++RVPC  KG  ++F +   + + ++  + +  VA    + +++I   +  +W+ M R +GA +   S   G + L F+V+   G T +V  N +PS WK G
Sbjct:   53 AHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKG-GVRFTI---NGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQM-LSFRVTNMDGQT-LVFRNIVPSGWKFG 268          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 69/252 (27.38%), Postives = 116/252 (46.03%), Query Frame = 2
Query:   29 LLSVMLLLPALCYSHYTSTYS-------RATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCK---------VPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD--KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGS---AGLTWVVANNAIPSDWKAG 718
            +LSV+  + AL  +     Y+        AT+YG  D+ GT  GACG+G         N A +S  L+ NG  CGAC++++C           P +                    +   PR +  +A+P   K AE Y  G+V V FRRVPC  +G  ++F +   + + ++  + +  VAG  +++ + + +  +  W+ M R +G  +  +S   G  SL F+V+ S   +  +W    N  P++WK G
Sbjct:    7 VLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAE-YRAGIVPVSFRRVPCRKRG-GIRFTI---NGFRYFNLVLVTNVAGAGNIVRLGV-KGTHTSWMTMSRNWGQNWQSNSVLVGQ-SLSFRVTSSDRRSSTSW----NIAPANWKFG 247          
The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
EXPA5_ORYSJ8.312e-1729.73Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP14_ORYSJ1.418e-1628.38Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ7.037e-1627.48Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ7.037e-1627.93Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ARATH2.047e-1527.47Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 ... [more]
EXPA9_ARATH3.492e-1528.05Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA4_ORYSJ5.957e-1530.83Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI5.957e-1530.83Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP24_ORYSJ5.957e-1527.48Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA6_ARATH1.016e-1427.38Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bp
TTTGCAAATGGCGTTATATCAATACTACCTTCTTTCCGTCATGCTGCTTT
TGCCTGCATTGTGTTACTCTCATTACACATCCACATATTCTAGAGCTACA
TACTATGGTAGCCCTGATAGTTTAGGGACACCAACTGGTGCTTGCGGGTT
TGGTGAATATGGAAGAACTGTAAATGATGCTAACGTGGCCGGTGTGTCGA
GGCTTTGGAAAAATGGAACTGGTTGTGGAGCTTGCTATCAAGTCAGGTGC
AAGGTACCACAACTTTGCACAGATTATGGGGTGTACGTGGTGGTGACTGA
CTACGGTGAAGGAGACAAAACAGACTTCATCCTCAGCCCGCGCGCATATG
GAAGAATGGCACTTCCAGATAAGTCAGCAGAGCTCTATTCTTATGGTGTG
GTCAACGTTGAATTCCGGAGAGTCCCTTGCTGGTACAAAGGCTACAACCT
TCAGTTCAAGGTCCATGAAAACAGCAGGTACCCACATTACTTGGCCATAG
CCATTCTGTACGTAGCTGGCCAAAATGATGTCCTAGCAGTTGAAATATGG
CAGGAGGATTATCAAGAATGGGTGGCAATGAGAAGGGCTTTCGGTGCAGT
ATTTGACATCTCTAGTCCACCAGAAGGAGCAATTAGTTTGAGGTTTCAAG
TGAGTGGCAGCGCGGGGCTCACATGGGTTGTGGCAAACAATGCTATTCCT
AGCGATTGGAAAGCTGGCGTTGCTT
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