CF835127
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17 Identity = 66/222 (29.73%), Postives = 104/222 (46.85%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKVP----------QLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 + AT+YG D+ GT GACG+G N A +S L+ NG CGAC++VRC + + PRA+ M+ P + L+ G+V V +RRV C KG ++F ++ +S ++ + + V G DV AV + E W A+ R +G + ++ +G +L F+V+ G + VV+NNA+P W G Sbjct: 67 AHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKG-GIRFTINGHS---YFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQ-ALSFRVTTGDGRS-VVSNNAVPRGWSFG 282
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16 Identity = 63/222 (28.38%), Postives = 106/222 (47.75%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTD-------FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 + AT+YG D+ GT G CG+G+ Y + N A + L+ +G CG CY++ C + PQ C D + PR + MA P + +YS G++ V ++RVPC KG ++F + + + ++ + + VA + +++I + +W+ M R +GA + S G +L F+V+ G T +V N +PS WK G Sbjct: 37 AHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKG-GVRFTI---NGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQ-TLSFRVTNMDGQT-LVFKNIVPSGWKFG 252
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16 Identity = 61/222 (27.48%), Postives = 104/222 (46.85%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTD-------FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 + AT+YG D+ GT GACG+G Y + N A + L+ +G CG CY++ C + PQ C + + PR + MA P + +YS G++ V ++RVPC KG L+F + + + ++ + + VA + ++E+ + +W+ M R +GA + + G L F+V+ + T +V N +P WK G Sbjct: 42 AHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKG-GLRFTI---NGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQ-GLSFRVTNTDDQT-LVFTNVVPPGWKFG 257
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16 Identity = 62/222 (27.93%), Postives = 106/222 (47.75%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTD-------FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 + AT+YG D+ GT GACG+G+ Y + N A + L+ +G CG CY++ C + PQ C D + PR + MA P + +Y G++ V ++RVPC KG ++F + + + ++ + + VA + ++++ + +W+ M R +GA + S G + L F+V+ G T +V N +PS WK G Sbjct: 55 AHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKG-GVRFTI---NGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQM-LSFRVTNMDGQT-LVFRNIVPSGWKFG 270
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPB5_ARATH (Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15 Identity = 64/233 (27.47%), Postives = 106/233 (45.49%), Query Frame = 2 Query: 62 CYSHYTSTYSRA--TYYGSPDSLGTPTGACGFGE------YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXK--TDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISS--PPEGAISLRF--QVSGSAGLTWVVANNAIPSDWKAG 718 CY H + ++ A T+YG + GT GACG+G+ Y V+ AG L+K+G GCGACY+++C P K F LS +A+G +A K +L + G + V ++R C + + V + P+Y++ A+ + G + +E+ Q +++ M AV+ +S P +G ++R VSG ++A IP W G Sbjct: 26 CYCHNKTHWNTAGITWYGDREGPGTTGGACGYGDAVAKHPYRCMVS----AGGPSLFKDGKGCGACYRLKCDHPLCTKKPIKVMISDECPGCTKESVHFDLSGKAFGALAKRGKGDQLRNLGELKVSYKRACCKHPKTMIAIHVDAGAN-PYYMSFAVKFANGDGNFACIEV-QPAGGQYMKMEEMRSAVWRLSPGVPLKGPFNIRLTSAVSGKK----IIAKGVIPEKWSPG 248
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15 Identity = 62/221 (28.05%), Postives = 104/221 (47.06%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRC---------KVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 + AT+YG D+ GT GACG+G N A +S L+ NG CG+C++++C P + + PR + +A+P S Y G+V V +RR+PC KG ++F + + + ++ + + VAG DV+ V + + Q W+ + R +G + ++ G SL F+V S G + +NN PS+W+ G Sbjct: 35 AHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKG-GIRFTI---NGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQ-WLDLSRNWGQNWQSNALLVGQ-SLSFRVKTSDGRS-STSNNIAPSNWQFG 248
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15 Identity = 74/240 (30.83%), Postives = 110/240 (45.83%), Query Frame = 2 Query: 26 YLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCK------VP-QLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 +LL + A Y + S + AT+YG D+ GT GACG+G N A +S L+ +G CG+CY++RC +P + + PR + MA P Y G+V V FRRVPC KG ++F V+ +S ++ + + VAG DV +V I + W M R +G + ++ +G SL FQV+ S G T V +NN W+ G Sbjct: 8 FLLFLARQASAAGYGGWQSAH--ATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKG-GVRFTVNGHS---YFNLVLVTNVAGAGDVRSVSI-KGSRTGWQPMSRNWGQNWQSNAFLDGQ-SLSFQVTASDGRT-VTSNNVAHPGWQFG 238
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15 Identity = 74/240 (30.83%), Postives = 110/240 (45.83%), Query Frame = 2 Query: 26 YLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCK------VP-QLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 +LL + A Y + S + AT+YG D+ GT GACG+G N A +S L+ +G CG+CY++RC +P + + PR + MA P Y G+V V FRRVPC KG ++F V+ +S ++ + + VAG DV +V I + W M R +G + ++ +G SL FQV+ S G T V +NN W+ G Sbjct: 8 FLLFLARQASAAGYGGWQSAH--ATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKG-GVRFTVNGHS---YFNLVLVTNVAGAGDVRSVSI-KGSRTGWQPMSRNWGQNWQSNAFLDGQ-SLSFQVTASDGRT-VTSNNVAHPGWQFG 238
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15 Identity = 61/222 (27.48%), Postives = 105/222 (47.30%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTD-------FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 + AT+YG D+ GT GACG+ + Y + N A + L+ +G CG CY++ C + PQ C + + PR + MA P + +Y G++ V ++RVPC KG ++F + + + ++ + + VA + +++I + +W+ M R +GA + S G + L F+V+ G T +V N +PS WK G Sbjct: 53 AHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKG-GVRFTI---NGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQM-LSFRVTNMDGQT-LVFRNIVPSGWKFG 268
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14 Identity = 69/252 (27.38%), Postives = 116/252 (46.03%), Query Frame = 2 Query: 29 LLSVMLLLPALCYSHYTSTYS-------RATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCK---------VPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD--KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGS---AGLTWVVANNAIPSDWKAG 718 +LSV+ + AL + Y+ AT+YG D+ GT GACG+G N A +S L+ NG CGAC++++C P + + PR + +A+P K AE Y G+V V FRRVPC +G ++F + + + ++ + + VAG +++ + + + + W+ M R +G + +S G SL F+V+ S + +W N P++WK G Sbjct: 7 VLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAE-YRAGIVPVSFRRVPCRKRG-GIRFTI---NGFRYFNLVLVTNVAGAGNIVRLGV-KGTHTSWMTMSRNWGQNWQSNSVLVGQ-SLSFRVTSSDRRSSTSW----NIAPANWKFG 247 The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bpback to top |