CF835127

Overview
NameCF835127
Unique NameCF835127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5287 contig Csv1_Contig5287:380..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 78/254 (30.71%), Postives = 119/254 (46.85%), Query Frame = 2
Query:   29 LLSVMLLLPALCYSH-YTSTY----------SRATYYGSP--DSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYG-------RMALPDKSAE---LYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            LL V+ LLPAL   H + ST           ++A+YY +   D++G   GACGFG+ G+        G+S  L++ G  CG CY+V+C V  L                   +F L   A G          LP +S E   L+  GV+ +++RRV C   G  ++F V   S    +L + I  V G  DV +V+I +     W++M R +G ++ I+S   G   L F+++ S G T +   N +P +W  G
Sbjct:    5 LLLVLFLLPALATGHQHPSTLGSSALSEWRSAKASYYAADPEDAIG---GACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC-VDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDG-GVRFAVAGRS---FFLTVLISNVGGAGDVRSVKI-KGTESGWLSMGRNWGQIWHINSDFRGQ-PLSFELTSSDGKT-LTNYNVVPKEWDFG 247          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 65/243 (26.75%), Postives = 111/243 (45.68%), Query Frame = 2
Query:   38 VMLLLPALCYSHYTSTYSR-----ATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILS---------PRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +++LL +LC    T++ ++     AT+YG  D+ GT  GACG+G+ YG        A  + L+  G  CGAC+ + C   +                    ++ LS         PR +  M+ P  ++  +Y  G+V V +RRVPC   G  ++F V+ +S    Y  + ++   G +  +A    +     W+AM R +GA +  ++  +G  +L F+V    G   V A +  P+ W  G
Sbjct:    6 MLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSG-GIRFAVNGHS----YFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQ-ALSFRVQADDGRV-VTAADVAPAGWSFG 241          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 64/219 (29.22%), Postives = 100/219 (45.66%), Query Frame = 2
Query:   95 ATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGV-SRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDF---------ILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            AT+YG  D+ GT  GACG+G    T    N A + S L+ +G  CG CYQ+ C                        D+            PR +  MA P  +   +Y  G+V V F+RV C  KG  ++F ++ NS   ++  + I  V G   + +V+I +     WV M R +GA +  ++      ++ F V+ +AG T +V  +  PS+W+ G
Sbjct:   29 ATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKG-GVRFTINGNS---YFELVLITNVGGPGSIKSVQI-KGTKTGWVTMSRNWGANWQANNYLNNQ-AISFSVTSTAGKT-LVFEDVAPSNWQFG 240          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 62/237 (26.16%), Postives = 113/237 (47.68%), Query Frame = 2
Query:   29 LLSVMLLLPALCYSHYTSTY--SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +L  +L + ALC +   S +    AT+YG  D  GT  GACG+G  Y +     N A  + L+ +G  CG CY + C   K P  C                   +  + R Y  M+ P  ++  +YS G+V + +++V CW  G  ++F +   + + ++  + +  +AG   ++++ + +     W+ M R +GA +   +   G  +L F V+ + G T +V ++A+P+ W  G
Sbjct:    4 ILLQLLAVVALCIAPARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNYG----GWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYG-GVRFII---NGFNYFELVLVTNMAGSGSIVSMSV-KGSCTGWIQMTRNWGANWQCLAGLAGQ-ALSFNVTSTGGQT-IVFDDAVPAGWSFG 229          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14
Identity = 63/222 (28.38%), Postives = 107/222 (48.20%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRC-KVPQLCXXXXXXXXXXXXXXXXKT--------DFILSPRAYGRMALPD--KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            + AT+YG  D+ GT  GACG+G         N A +S  L+ NG  CGAC++++C   PQ C                           +   PR +  +A+P   K A+ Y  G+V V +RRVPC  +G  ++F +   + + ++  + I  VAG  D++   + +     W+++ R +G  +  ++   G  +L F+V+GS   T   + N +PS+W+ G
Sbjct:   34 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQ-YRAGIVPVSYRRVPCRKRG-GIRFTI---NGHRYFNLVLITNVAGAGDIVRASV-KGSRTGWMSLSRNWGQNWQSNAVLVGQ-ALSFRVTGSDRRT-STSWNMVPSNWQFG 247          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14
Identity = 66/217 (30.41%), Postives = 100/217 (46.08%), Query Frame = 2
Query:   95 ATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT------DFILSPRAYGRMALP--DKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            AT+YG  D+ GT  GACG+G  Y      +  A  + L+ NG  CGAC++VRC     C                         +   PR +  MA P   + A+  + GVV V++RRV C  +G  ++F +  +S   ++  + +  V G  DV AV + +     W AM   +GA +   +  +G   L F+V+ S G T V ++N  PS W  G
Sbjct:   32 ATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGSCLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARA-GVVPVQYRRVACAKQG-GIRFTITGHS---YFNLVLVTNVGGAGDVTAVSV-KGSRSGWQAMSHNWGANWQNGANLDGQ-PLSFRVTASDGRT-VTSDNVAPSGWSFG 240          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 61/220 (27.73%), Postives = 102/220 (46.36%), Query Frame = 2
Query:   95 ATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXK-------TDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            AT+YG  D+ GT  GACG+G  Y +     N A  + L+  G  CG CY + C   K P+ C                          +   PR +  M+ P  ++  +Y  G+V V +++V CW +G  ++F V   S + ++  + I  VAG   V A+ + +     W+ + R +GA +  +S   G  +L F+V+ + G T  + N+ +P  W+ G
Sbjct:   32 ATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQG-GVRFTV---SGFNYFELVLITNVAGSGSVQAMSV-KGSKTGWIPLARNWGANWQCNSALVGQ-ALSFRVTSTGGQTLQI-NSVVPEWWEFG 244          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 64/222 (28.83%), Postives = 100/222 (45.05%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRC---KVPQLC-------XXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            + AT+YG  D+ GT  GACG+G         N A +S  L+ +G  CG CYQ+ C   KVPQ C                          +   PR +  MA P   +   Y  G+V + +++V C   G  ++F ++  +   ++  + I  VAG  ++  V I      +W  M R +GA +  ++   G  SL F+V  S G +   A N +PS+W+ G
Sbjct:   31 AHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSG-GMRFTINGRN---YFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQ-SLSFKVQLSDG-SIKAALNVVPSNWRFG 246          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 62/224 (27.68%), Postives = 101/224 (45.09%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCK---------VPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALP-DKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGS---AGLTWVVANNAIPSDWKAG 718
            + AT+YG  D+ GT  GACG+G         N A +S  L+ NG  CGAC++++C           P +                    +   PR +  +A+P      LY  G+V V +RRVPC   G  ++F V   + + ++  + +  VAG  D+  V + +    +WV M R +G  +  ++   G  SL F+V+ S   +  +W    N  P+ W+ G
Sbjct:   39 AHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIG-GIRFTV---NGFRYFNLVLVTNVAGAGDINGVSV-KGSKTDWVRMSRNWGQNWQSNAVLIGQ-SLSFRVTASDRRSSTSW----NVAPATWQFG 252          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 71/239 (29.71%), Postives = 101/239 (42.26%), Query Frame = 2
Query:   41 MLLLPALCYSHYTS--TYSRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILS---------PRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +LLL AL Y    +  T + AT+YG  D  GT  GACG+G  Y       N A  S L+ +G  CGACY + C   Q                    ++            PR +  M+ P   S  +Y  G+V V F+RVPC   G  ++F +   S   ++  + +  V G   V  V I +    +W+AM R +G  +  S+      SL F+V         V N A PS+W  G
Sbjct:    8 VLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSG-GIRFTI---SGRDYFELVTVFNVGGSGVVAQVSI-KGSKTDWMAMSRNWGQNWQ-SNAYLNTQSLSFKVKLDDAREVTVWNIA-PSNWNFG 239          
The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
EXP10_ORYSJ1.016e-1430.71Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ1.733e-1426.75Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP12_ORYSJ1.733e-1429.22Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ2.264e-1426.16Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA4_ARATH6.586e-1428.38Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP11_ORYSJ6.586e-1430.41Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ1.123e-1327.73Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH1.123e-1328.83Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXPA3_ARATH2.503e-1327.68Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXP33_ORYSJ3.269e-1329.71Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bp
TTTGCAAATGGCGTTATATCAATACTACCTTCTTTCCGTCATGCTGCTTT
TGCCTGCATTGTGTTACTCTCATTACACATCCACATATTCTAGAGCTACA
TACTATGGTAGCCCTGATAGTTTAGGGACACCAACTGGTGCTTGCGGGTT
TGGTGAATATGGAAGAACTGTAAATGATGCTAACGTGGCCGGTGTGTCGA
GGCTTTGGAAAAATGGAACTGGTTGTGGAGCTTGCTATCAAGTCAGGTGC
AAGGTACCACAACTTTGCACAGATTATGGGGTGTACGTGGTGGTGACTGA
CTACGGTGAAGGAGACAAAACAGACTTCATCCTCAGCCCGCGCGCATATG
GAAGAATGGCACTTCCAGATAAGTCAGCAGAGCTCTATTCTTATGGTGTG
GTCAACGTTGAATTCCGGAGAGTCCCTTGCTGGTACAAAGGCTACAACCT
TCAGTTCAAGGTCCATGAAAACAGCAGGTACCCACATTACTTGGCCATAG
CCATTCTGTACGTAGCTGGCCAAAATGATGTCCTAGCAGTTGAAATATGG
CAGGAGGATTATCAAGAATGGGTGGCAATGAGAAGGGCTTTCGGTGCAGT
ATTTGACATCTCTAGTCCACCAGAAGGAGCAATTAGTTTGAGGTTTCAAG
TGAGTGGCAGCGCGGGGCTCACATGGGTTGTGGCAAACAATGCTATTCCT
AGCGATTGGAAAGCTGGCGTTGCTT
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