CF835127
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14 Identity = 78/254 (30.71%), Postives = 119/254 (46.85%), Query Frame = 2 Query: 29 LLSVMLLLPALCYSH-YTSTY----------SRATYYGSP--DSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYG-------RMALPDKSAE---LYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 LL V+ LLPAL H + ST ++A+YY + D++G GACGFG+ G+ G+S L++ G CG CY+V+C V L +F L A G LP +S E L+ GV+ +++RRV C G ++F V S +L + I V G DV +V+I + W++M R +G ++ I+S G L F+++ S G T + N +P +W G Sbjct: 5 LLLVLFLLPALATGHQHPSTLGSSALSEWRSAKASYYAADPEDAIG---GACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKC-VDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDG-GVRFAVAGRS---FFLTVLISNVGGAGDVRSVKI-KGTESGWLSMGRNWGQIWHINSDFRGQ-PLSFELTSSDGKT-LTNYNVVPKEWDFG 247
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14 Identity = 65/243 (26.75%), Postives = 111/243 (45.68%), Query Frame = 2 Query: 38 VMLLLPALCYSHYTSTYSR-----ATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILS---------PRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 +++LL +LC T++ ++ AT+YG D+ GT GACG+G+ YG A + L+ G CGAC+ + C + ++ LS PR + M+ P ++ +Y G+V V +RRVPC G ++F V+ +S Y + ++ G + +A + W+AM R +GA + ++ +G +L F+V G V A + P+ W G Sbjct: 6 MLVLLASLCALLLTASAAKWTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSG-GIRFAVNGHS----YFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQ-ALSFRVQADDGRV-VTAADVAPAGWSFG 241
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14 Identity = 64/219 (29.22%), Postives = 100/219 (45.66%), Query Frame = 2 Query: 95 ATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGV-SRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDF---------ILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 AT+YG D+ GT GACG+G T N A + S L+ +G CG CYQ+ C D+ PR + MA P + +Y G+V V F+RV C KG ++F ++ NS ++ + I V G + +V+I + WV M R +GA + ++ ++ F V+ +AG T +V + PS+W+ G Sbjct: 29 ATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKG-GVRFTINGNS---YFELVLITNVGGPGSIKSVQI-KGTKTGWVTMSRNWGANWQANNYLNNQ-AISFSVTSTAGKT-LVFEDVAPSNWQFG 240
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14 Identity = 62/237 (26.16%), Postives = 113/237 (47.68%), Query Frame = 2 Query: 29 LLSVMLLLPALCYSHYTSTY--SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 +L +L + ALC + S + AT+YG D GT GACG+G Y + N A + L+ +G CG CY + C K P C + + R Y M+ P ++ +YS G+V + +++V CW G ++F + + + ++ + + +AG ++++ + + W+ M R +GA + + G +L F V+ + G T +V ++A+P+ W G Sbjct: 4 ILLQLLAVVALCIAPARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNYG----GWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYG-GVRFII---NGFNYFELVLVTNMAGSGSIVSMSV-KGSCTGWIQMTRNWGANWQCLAGLAGQ-ALSFNVTSTGGQT-IVFDDAVPAGWSFG 229
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14 Identity = 63/222 (28.38%), Postives = 107/222 (48.20%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRC-KVPQLCXXXXXXXXXXXXXXXXKT--------DFILSPRAYGRMALPD--KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 + AT+YG D+ GT GACG+G N A +S L+ NG CGAC++++C PQ C + PR + +A+P K A+ Y G+V V +RRVPC +G ++F + + + ++ + I VAG D++ + + W+++ R +G + ++ G +L F+V+GS T + N +PS+W+ G Sbjct: 34 AHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQ-YRAGIVPVSYRRVPCRKRG-GIRFTI---NGHRYFNLVLITNVAGAGDIVRASV-KGSRTGWMSLSRNWGQNWQSNAVLVGQ-ALSFRVTGSDRRT-STSWNMVPSNWQFG 247
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 6.586e-14 Identity = 66/217 (30.41%), Postives = 100/217 (46.08%), Query Frame = 2 Query: 95 ATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT------DFILSPRAYGRMALP--DKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 AT+YG D+ GT GACG+G Y + A + L+ NG CGAC++VRC C + PR + MA P + A+ + GVV V++RRV C +G ++F + +S ++ + + V G DV AV + + W AM +GA + + +G L F+V+ S G T V ++N PS W G Sbjct: 32 ATFYGGSDASGTMGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGSCLAGTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARA-GVVPVQYRRVACAKQG-GIRFTITGHS---YFNLVLVTNVGGAGDVTAVSV-KGSRSGWQAMSHNWGANWQNGANLDGQ-PLSFRVTASDGRT-VTSDNVAPSGWSFG 240
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13 Identity = 61/220 (27.73%), Postives = 102/220 (46.36%), Query Frame = 2 Query: 95 ATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXK-------TDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 AT+YG D+ GT GACG+G Y + N A + L+ G CG CY + C K P+ C + PR + M+ P ++ +Y G+V V +++V CW +G ++F V S + ++ + I VAG V A+ + + W+ + R +GA + +S G +L F+V+ + G T + N+ +P W+ G Sbjct: 32 ATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQG-GVRFTV---SGFNYFELVLITNVAGSGSVQAMSV-KGSKTGWIPLARNWGANWQCNSALVGQ-ALSFRVTSTGGQTLQI-NSVVPEWWEFG 244
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13 Identity = 64/222 (28.83%), Postives = 100/222 (45.05%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRC---KVPQLC-------XXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 + AT+YG D+ GT GACG+G N A +S L+ +G CG CYQ+ C KVPQ C + PR + MA P + Y G+V + +++V C G ++F ++ + ++ + I VAG ++ V I +W M R +GA + ++ G SL F+V S G + A N +PS+W+ G Sbjct: 31 AHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSG-GMRFTINGRN---YFELVLISNVAGGGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQ-SLSFKVQLSDG-SIKAALNVVPSNWRFG 246
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13 Identity = 62/224 (27.68%), Postives = 101/224 (45.09%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCK---------VPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALP-DKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGS---AGLTWVVANNAIPSDWKAG 718 + AT+YG D+ GT GACG+G N A +S L+ NG CGAC++++C P + + PR + +A+P LY G+V V +RRVPC G ++F V + + ++ + + VAG D+ V + + +WV M R +G + ++ G SL F+V+ S + +W N P+ W+ G Sbjct: 39 AHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIG-GIRFTV---NGFRYFNLVLVTNVAGAGDINGVSV-KGSKTDWVRMSRNWGQNWQSNAVLIGQ-SLSFRVTASDRRSSTSW----NVAPATWQFG 252
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13 Identity = 71/239 (29.71%), Postives = 101/239 (42.26%), Query Frame = 2 Query: 41 MLLLPALCYSHYTS--TYSRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILS---------PRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 +LLL AL Y + T + AT+YG D GT GACG+G Y N A S L+ +G CGACY + C Q ++ PR + M+ P S +Y G+V V F+RVPC G ++F + S ++ + + V G V V I + +W+AM R +G + S+ SL F+V V N A PS+W G Sbjct: 8 VLLLCALAYQAVDAQWTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSG-GIRFTI---SGRDYFELVTVFNVGGSGVVAQVSI-KGSKTDWMAMSRNWGQNWQ-SNAYLNTQSLSFKVKLDDAREVTVWNIA-PSNWNFG 239 The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bpback to top |