CF835127

Overview
NameCF835127
Unique NameCF835127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5287 contig Csv1_Contig5287:380..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 59/238 (24.79%), Postives = 111/238 (46.64%), Query Frame = 2
Query:   41 MLLLPALCYSHYTSTY--SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTD-----FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +L + ALC +   S +    AT+YG  D  GT  GACG+G  Y +     N A  + L+ +G  CG CY + C   K P  C                  D     +  + R +  M+ P  ++  +Y+ G++ + +++V CW  G  ++F +   + + ++  + +  +AG   + ++ + +     W+ M R +GA +   +   G  +L F V+ + G T +V ++A+P+ W  G
Sbjct:    8 LLAVVALCIAPARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDLPYGGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYG-GVRFTI---NGFNYFELVLVTNMAGSGSIASMSV-KGSCTGWIQMTRNWGANWQCLAGLAGQ-ALSFNVTSTGGQT-IVFDDAVPAGWSFG 238          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 59/220 (26.82%), Postives = 95/220 (43.18%), Query Frame = 2
Query:   86 YSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKT-------DFILSPRAYGRMALPDKSAELY-SYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            Y+ AT+YG      T  GACG+G    +    + A +S  L+ +G GCG C+Q+ C     C                          +   PR +  MA P      Y   G++ V +RRVPC   G  ++F+   NS   ++L I ++ V G  D+ ++ + +     W++M   +GA +   S   G  SL F+V+       + A N  P++W  G
Sbjct:   39 YAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSG-GMRFQFQGNS---YWLLIFVMNVGGAGDIKSMAV-KGSRTNWISMSHNWGASYQAFSSLYGQ-SLSFRVTSYTTGETIYAWNVAPANWSGG 252          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 61/238 (25.63%), Postives = 110/238 (46.22%), Query Frame = 2
Query:   41 MLLLPALCYSHYTSTYSR--ATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXKTD-----FILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +L + ALC +   S + +  AT+YG  D  GT  GACG+G  Y +     N A  + L+ NG  CG CY + C   K P  C                  D     +  + R +  M+ P  ++  +YS G+V + +++V CW  G  ++F +   +   ++  + +  +AG   + ++ + +     W+ M R +GA +   +   G  +L F V+ + G T +V ++ +P+ W  G
Sbjct:    8 LLAILALCIAPARSGWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDLPYGGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSG-GVRFTI---TGLNYFELVLVTNMAGSGSIASMSV-KGSSTGWIQMSRNWGANWQCLAGLAGQ-ALSFTVTSTGGQT-IVFDSVVPAGWSFG 238          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 63/224 (28.12%), Postives = 103/224 (45.98%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC-----------KVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD--KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            + AT+YG  D+ GT  GACG+G  Y +     N A  + L+ +G  CGAC++++C             P +                    +   PR +  +A+P     AE Y  G+V V +RRVPC  KG  ++F +   + + ++  + I  VAG  D++   + +     W+ M R +G  +  +S   G  +L F+V+GS   T   + NA P+ W  G
Sbjct:   39 AHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAE-YRAGIVPVSYRRVPCRKKG-GVRFTI---NGFRYFNLVLITNVAGAGDIVRASV-KGTSTGWMPMSRNWGQNWQSNSVLVGQ-ALSFRVTGSDRRT-STSWNAAPAGWHFG 254          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 67/242 (27.69%), Postives = 103/242 (42.56%), Query Frame = 2
Query:   29 LLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQ----------LCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +L V++ L A       +  + AT+YG  D  GT  GACG+G  Y       N A  S L+ +G  CGACY + C   Q          +                    +   PR +  M+ P  ++  +Y  G+V V ++RVPC   G  ++F +   S + ++  + +  V G   V  + I +     W+AM R +GA +  ++   G  SL F V    G   V A N  PS+W  G
Sbjct:   11 MLLVLVTLCAFACKRSVAQSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSG-GIRFAI---SGHDYFELVTVTNVGGSGVVAQMSI-KGSNTGWMAMSRNWGANWQSNAYLAGQ-SLSFIVQLDDGRK-VTAWNVAPSNWFFG 245          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 64/218 (29.36%), Postives = 104/218 (47.71%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRC-KVPQLC--XXXXXXXXXXXXXXXXKTDFIL--SPRAYGRMALPD--KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +RAT+YG      T  GACG+G+  +       A +S  L+  G  CGACYQ+ C   PQ C                  KT+ +    P+ +  ++LP   K A+ Y  GVV V++RR+ C   G  ++F+   N   P++L I    V G  D+  +++ + D   W+ M++ +G  +       G   + F+V+ S G+T    NN +P++W  G
Sbjct:   51 ARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPDYSKTEGVWCNPPQKHFDLSLPMFLKIAQ-YKAGVVPVKYRRISCARTG-GVKFETKGN---PYFLMILPYNVGGAGDIKLMQV-KGDKTGWITMQKNWGQNWTTGVNLTGQ-GISFRVTTSDGVT-KDFNNVMPNNWGFG 260          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 63/247 (25.51%), Postives = 105/247 (42.51%), Query Frame = 2
Query:   29 LLSVMLLLPALCYSHYTSTYS----RATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRC---KVPQLC-------XXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGV 721
            L +  L++  L  S +   +      AT+YG  D+ GT  GACG+G         N A +S  L+ +G  CG CY + C     PQ C                          +   PR +  MA P      +Y  G++ V +++V CW +G  ++F +     +  +  + +  VAG   V +V + +     W+ + R +GA +  +S   G  +L F V+ + G T  +  N +PS W  G+
Sbjct:    6 LFATSLVITVLAASGFAPAHGWNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQG-GIRFTM---GGFNFFELVLVSNVAGSGSVRSVSV-KGGSTGWITLNRNWGANWQCNSGLVGQ-ALSFAVTSTGGQTLYI-YNVVPSWWSFGM 245          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 64/218 (29.36%), Postives = 104/218 (47.71%), Query Frame = 2
Query:   89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRC-KVPQLC--XXXXXXXXXXXXXXXXKTDFIL--SPRAYGRMALPD--KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            +RAT+YG      T  GACG+G+  +       A +S  L+  G  CGACYQ+ C   PQ C                  KT+ +    P+ +  ++LP   K A+ Y  GVV V++RR+ C   G  ++F+   N   P++L I    V G  D+  +++ + D   W+ M++ +G  +       G   + F+V+ S G+T    NN +P++W  G
Sbjct:   58 ARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPDYSKTEGVWCNPPQKHFDLSLPMFLKIAQ-YKAGVVPVKYRRISCARTG-GVKFETKGN---PYFLMILPYNVGGAGDIKLMQV-KGDKTGWITMQKNWGQNWTTGVNLTGQ-GISFRVTTSDGVT-KDFNNVMPNNWGFG 267          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 67/242 (27.69%), Postives = 108/242 (44.63%), Query Frame = 2
Query:   26 YLLSVMLLLPALCYSHYTSTYSRA--TYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCKVPQ-----LCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPD--KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEG-AISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            YL++V+LL+  L     ++ + RA  TYYG  DS  +  GACG+         A+ A +S  L+++G  CG CYQVRC  P      L                    +   PR +  M+ P   + A   + G+V V +RRV C  +G  ++F +       ++  + I  V G   V +V +     + W+ M R +GA +  S    G  +S +  ++ S   T++   N +PS W  G
Sbjct:    7 YLVTVILLVSTLSVGMCSNGWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRG-GVRFTMRGQG---NFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFL---NVVPSSWWFG 241          
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 66/247 (26.72%), Postives = 105/247 (42.51%), Query Frame = 2
Query:   32 LSVMLLLPALCYSHYTS------TYSRATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILS---------PRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEG-AISLRFQVSGSAGLTWVVANNAIPSDWKAG 718
            L V+L L   C S          T + AT+YG  D+ GT  G+CG+G  Y         A  S L+ +G  CGACY V C                        ++  S         PR +  M+ P  ++  +YS G+V V + R PC   G  ++F +   + + +Y  + +  VAG   V A  + +    EW++M R +G  +  ++   G A+S R Q      +T   A +  P++W+ G
Sbjct:    5 LLVVLFLSLCCASRLRGEAAQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVG-GIRFGI---AGHDYYELVLVTNVAGSGAVAAAWV-KGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVT---AYDVAPANWQFG 243          
The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
EXP19_ORYSJ3.269e-1324.79Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH4.269e-1326.82Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP18_ORYSJ4.269e-1325.63Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ORYSJ5.576e-1328.13Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ORYSJ1.622e-1227.69Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP23_ARATH3.614e-1229.36Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP25_ORYSJ4.720e-1225.51Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ARATH4.720e-1229.36Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP12_ARATH6.165e-1227.69Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXPA9_ORYSJ8.051e-1226.72Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06L12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bp
TTTGCAAATGGCGTTATATCAATACTACCTTCTTTCCGTCATGCTGCTTT
TGCCTGCATTGTGTTACTCTCATTACACATCCACATATTCTAGAGCTACA
TACTATGGTAGCCCTGATAGTTTAGGGACACCAACTGGTGCTTGCGGGTT
TGGTGAATATGGAAGAACTGTAAATGATGCTAACGTGGCCGGTGTGTCGA
GGCTTTGGAAAAATGGAACTGGTTGTGGAGCTTGCTATCAAGTCAGGTGC
AAGGTACCACAACTTTGCACAGATTATGGGGTGTACGTGGTGGTGACTGA
CTACGGTGAAGGAGACAAAACAGACTTCATCCTCAGCCCGCGCGCATATG
GAAGAATGGCACTTCCAGATAAGTCAGCAGAGCTCTATTCTTATGGTGTG
GTCAACGTTGAATTCCGGAGAGTCCCTTGCTGGTACAAAGGCTACAACCT
TCAGTTCAAGGTCCATGAAAACAGCAGGTACCCACATTACTTGGCCATAG
CCATTCTGTACGTAGCTGGCCAAAATGATGTCCTAGCAGTTGAAATATGG
CAGGAGGATTATCAAGAATGGGTGGCAATGAGAAGGGCTTTCGGTGCAGT
ATTTGACATCTCTAGTCCACCAGAAGGAGCAATTAGTTTGAGGTTTCAAG
TGAGTGGCAGCGCGGGGCTCACATGGGTTGTGGCAAACAATGCTATTCCT
AGCGATTGGAAAGCTGGCGTTGCTT
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