CF835127
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11 Identity = 61/220 (27.73%), Postives = 96/220 (43.64%), Query Frame = 2 Query: 95 ATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRC---KVPQLCXXXXXXXXXXXXXXXXK-------TDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 AT+YG D GT GACG+G Y + N A + L+ +G CG CY + C K + C + PR + M+ P + +Y G+V V +RRV CW +G ++F V + H+ + + VAG V AV + + W+ M R +GA + + G L F V+ + G +++ + P+ WK G Sbjct: 32 ATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRG-GVRFTV---GGFDHFELVLVANVAGSGSVAAVSV-RGAGTGWLQMSRNWGANWQSLAGLAGQ-PLSFGVTTTGG-QYILFQDVAPAGWKFG 244
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11 Identity = 62/221 (28.05%), Postives = 97/221 (43.89%), Query Frame = 2 Query: 95 ATYYGSPDSLGTPTGACGFGE-YGRTVNDANVAGVSRLWKNGTGCGACYQVRCKV---PQLCXXXXXXXXXXXXXXXXK-------TDFILSPRAYGRMALPD-KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEI-WQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 AT+YG D+ GT GACG+G Y + A + L+ +G CG CY + C P+ C + PR + MA P + +Y G+V V FRRVPC +G ++F V + ++ + + VA V ++E+ W+AM R +GA + + +G L F+V+ + G T V A +P W+ G Sbjct: 39 ATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRG-GVRFTV---AGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQ-GLSFRVTATDGQTIVFA-GVVPPSWRFG 253
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11 Identity = 60/222 (27.03%), Postives = 103/222 (46.40%), Query Frame = 2 Query: 89 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRC-KVPQLCXXXXXXXXXXXXXXXXKT--------DFILSPRAYGRMALPD--KSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 + AT+YG D+ GT GACG+G N A +S L+ +G CGAC++++C P+ C + PR++ +A+P K AE Y G+V + +RRV C G ++F + + + ++ + I VAG D+ + + W+++ R +G + ++ G SL F+V+ S T + N PS+W+ G Sbjct: 37 AHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAE-YRAGIVPISYRRVACRKSG-GIRFTI---NGHRYFNLVLITNVAGAGDIARTSV-KGSKTGWMSLTRNWGQNWQSNAVLVGQ-SLSFRVTSSDRRT-STSWNIAPSNWQFG 250
BLAST of CF835127 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11 Identity = 67/258 (25.97%), Postives = 113/258 (43.80%), Query Frame = 2 Query: 29 LLSVMLLLPALCYSHYTSTYS-----------------RATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSR-LWKNGTGCGACYQVRCKVPQLCXXXXXXXXXXXXXXXXKTDFILSPRAYGRMALPDK----------SAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAG 718 LL + L PA+C HY+S+ S RATYY + + GACG+G+ ++ G+S L++ G CGAC+++RC V L ++ P G P+K ++ G + V++RR+ C +G +++F V ++++ I VAG D+ AV+I + W+ M R +G + I++ +L F+V+ S T V + N P +W G Sbjct: 8 LLFLALSPPAIC--HYSSSTSSPSSSSVSSDASEWRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRC-VDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEG-SMRFTVDGGG---IFISVLITNVAGSGDIAAVKI-KGSRTGWLPMGRNWGQNWHINADLRNQ-ALSFEVTSSDRST-VTSYNVSPKNWNYG 255 The following BLAST results are available for this feature:
BLAST of CF835127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835127 ID=CF835127; Name=CF835127; organism=Citrus sinensis; type=EST; length=725bpback to top |