CF835229

Overview
NameCF835229
Unique NameCF835229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2753 contig Csv1_Contig2753:451..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_SPOFR (40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.336e-19
Identity = 48/110 (43.64%), Postives = 73/110 (66.36%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----DVGVKMERPA--DEPIPEA 343
            ++TCYA  +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+       + G K ERP   + P+ E+
Sbjct:  154 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGSGKRGEAGDKSERPEGYEPPVQES 263          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMO (40S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.582e-19
Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPEA 343
            ++TCYA  +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+      + G K ERP   + P+ E+
Sbjct:  154 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKGEAGDKSERPEGYEPPVQES 262          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.251e-18
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283
            ++TCYA  SQI+ IR+ M +I+     S DLK +V K + + I ++IEKA   +YPL +V+IRKVK+LK P+FDL  L+E+HGD
Sbjct:  154 RKTCYAQHSQIKAIRKNMTQIITNNVTSSDLKEVVNKLLPDSIAKDIEKACQGVYPLHDVYIRKVKVLKKPRFDLANLLELHGD 237          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.641e-18
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 283
            ++TCYA  SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+H D
Sbjct:  154 RKTCYAQQSQVRKIRARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHND 237          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.813e-16
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 2
Query:   20 PNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNV 211
            PNQ+K+T YA +SQIR IR+KM EI+  +A+SC L+ L  K I E+IGREIEKAT  IYPLQNV
Sbjct:  147 PNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.885e-15
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   17 LPNQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 319
            +P   +   YA  ++I++IR ++ EI+  + ++CDLK +V K I + I ++  KA   IYPL   FIRKVK+LK PK DL +LME+HG+  S   G  + RP
Sbjct:  147 VPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKSTAPGETVSRP 248          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 37/97 (38.14%), Postives = 63/97 (64.95%), Query Frame = 2
Query:   32 KRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 319
            K   YA  ++I+++R K+ E++  + A CDLK +V+K I + IG++      SI+PL    +RKVK+LK PK DLG+++E+H +  +++ G  + RP
Sbjct:  150 KSHAYAQTTRIKKLRAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELHSEGKADEFGEGVPRP 246          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   38 TCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 277
            TCYA +SQ+R IRRK+   +  +AA   +    +  I E   ++IEK T +I+PLQN+ IRKVK+LK PK D  K+ E++
Sbjct:  159 TCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238          
BLAST of CF835229 vs. ExPASy Swiss-Prot
Match: RS3A_DICDI (40S ribosomal protein S3a OS=Dictyostelium discoideum GN=rps3a PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   23 NQVKRTCYAPASQIRQIRRKMREIMIAQAASCDLKGLVEKFI--------------AEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-------SEDVGVKMER 316
            +Q K+T YA  S+++ IR+KM +I+    +S DLK +V+  I              A  +  +I     SI+P+ NVFIRKVK+LK PK D  KL E++          +E+VG  +ER
Sbjct:  147 SQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELYASSATSTIAPTEEVGTAVER 265          
The following BLAST results are available for this feature:
BLAST of CF835229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
RS3A_SPOFR7.336e-1943.6440S ribosomal protein S3a OS=Spodoptera frugiperda... [more]
RS3A_BOMMO9.582e-1944.0440S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1[more]
RS3A_CULQU1.251e-1850.0040S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A_DROGR3.641e-1848.8140S ribosomal protein S3a OS=Drosophila grimshawi ... [more]
RS3A_PODAN5.813e-1664.0640S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_SCHJA2.885e-1542.1640S ribosomal protein S3a OS=Schistosoma japonicum... [more]
RS3A_TAESO1.096e-1438.1440S ribosomal protein S3a OS=Taenia solium PE=2 SV... [more]
RS3A_TETTH6.016e-1345.0040S ribosomal protein S3a OS=Tetrahymena thermophi... [more]
RS3A_DICDI1.482e-1136.1340S ribosomal protein S3a OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835229 ID=CF835229; Name=CF835229; organism=Citrus sinensis; type=EST; length=568bp
TTGGATTCACAATTGACTTCCAAATCAGGTTAAGAGGACTTGCTACGCAC
CCGCCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGATT
GCTCAGGCAGCATCCTGTGATCTTAAGGGCTTGGTCGAAAAGTTCATTGC
TGAAATAATTGGAAGAGAGATTGAGAAGGCAACCTTAAGCATATACCCCT
TACAAAATGTTTTCATTCGCAAAGTGAAGATCTTGAAAGCTCCTAAGTTT
GATCTTGGAAAGTTGATGGAGGTTCATGGTGATTACTCTGAGGATGTTGG
TGTAAAGATGGAAAGGCCAGCTGATGAGCCCATTCCTGAAGCACCAACTG
AAGTGATTGGAGCTTGAATAAAGAAATTTTTGTAGTTTGTCTTTATAACC
AATCAGATCTAGTAATTTTTGGGCAGTTTTGTTTGTGATGAACTCAAATT
TGTTTTGAGTTTACATATTTTATTCTACCTGATATTTGAGATGGCTGCAG
CGGTTTGTGGTATGAACATGATTACCTTATTCTTTATTCCAGTGGATTAG
ATAAAAAAAAAAAAAAAA
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