CF835230

Overview
NameCF835230
Unique NameCF835230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig802 contig Csv1_Contig802:906..1524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835230 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = -3
Query:  340 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFTPLATGAGFSGIRSDLVTGNFWVMEFYK 618
            W D HC  LLKNCY ++PE+GKVIVVE +LP     + +++   H+D++M+  NPGGKER + EF  LA GAGFSG ++  +  N W +EF K
Sbjct:  272 WSDAHCATLLKNCYDALPENGKVIVVECVLPVNTEATPKAQGVFHVDMIMLAHNPGGKERYEREFRELAKGAGFSGFKATYIYANAWAIEFIK 364          
BLAST of CF835230 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGU (Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.405e-22
Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  340 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFTPLATGAGFSGIRSDLVTGNFWVMEFYK 618
            W D+HC K LKNCY ++P  GKVIV E +LP  P+TS+ +K+  HID +M+  NPGGKERT+ EF  LA GAGF G +         VMEF K
Sbjct:  272 WSDDHCAKFLKNCYDALPNIGKVIVAECVLPVYPDTSLATKNVIHIDCIMLAHNPGGKERTQKEFETLAKGAGFQGFQVMCCAFGTHVMEFLK 364          
BLAST of CF835230 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = -3
Query:  340 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFTPLATGAGFSGIRSDLVTGNFWVMEFYK 618
            W D HC  LLKNCY ++PE+GKVI+VE +LP       +++   H+D++M+  NPGG+ER + EF  LA GAGFSG ++  +  N W +EF K
Sbjct:  270 WSDAHCATLLKNCYDALPENGKVIIVECVLPVNTEAVPKAQGVFHVDMIMLAHNPGGRERYEREFHDLAKGAGFSGFKATYIYANAWAIEFIK 362          
BLAST of CF835230 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = -3
Query:  340 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFTPLATGAGFSGIRSDLVTGNFWVMEFYK 618
            WDD+  +K+LKNC+K++PE+G VIV+E +LP+V   + ES +    D+LMM  NPGGKERT  EF  LA  AGF+  +   ++    VMEF+K
Sbjct:  286 WDDDRSIKILKNCWKALPENGTVIVIEFVLPQVLGNNAESFNALTPDLLMMALNPGGKERTTIEFDGLAKAAGFAETKFFPISQGLHVMEFHK 378          
BLAST of CF835230 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.637e-17
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = -3
Query:  340 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFTPLATGAGFSGIRSDLVTGNFWVMEFYK 618
            W DEHC+K+L  CY+S+ + GK+I+VE ++P +P  ++ES     +D   +  N GGKER+K +F  LA+  GFS +       + WVME YK
Sbjct:  272 WSDEHCVKILNKCYESLAKGGKIILVESLIPVIPEDNLESHMVFSLDCHTLVHNQGGKERSKEDFEALASKTGFSTVDVICCAYDTWVMELYK 364          
BLAST of CF835230 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.905e-15
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = -3
Query:  340 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFTPLATGAGFSGIR-SDLVTGNFWVMEFYK 618
            W DE C++ L NC+K++  +GKVI+VE +LPE PNTS ESK  S +D LM     GG+ERT+ ++  L+  +GFS  + +     +  VMEFYK
Sbjct:  280 WSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372          
BLAST of CF835230 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGL (Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -3
Query:  436 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERT 618
            W DEHC KLLKNCY ++P +G+VIV E +LP  P+ S+ +K   H+D +M+T   GGKERT
Sbjct:  253 WSDEHCAKLLKNCYDALPVNGRVIVAEYILPAYPDQSLSTKGVIHMDCIMLTHFSGGKERT 313          
The following BLAST results are available for this feature:
BLAST of CF835230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
COMT1_MAIZE3.755e-2249.46Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
COMT1_EUCGU6.405e-2252.69Caffeic acid 3-O-methyltransferase OS=Eucalyptus g... [more]
COMT1_SACOF3.179e-2147.31Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
SMT_COPJA2.519e-1848.39(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
IMT1_MESCR3.637e-1741.94Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
CHOMT_MEDSA9.905e-1545.74Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]
COMT1_EUCGL6.420e-1454.10Caffeic acid 3-O-methyltransferase (Fragment) OS=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835230 ID=CF835230; Name=CF835230; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTAGGAAATAATTTGTCTGCATCCTTTATTCAACCTTT
TAAAGGCATTTTATAAGAGCCAATTGAAAACATATGATCTACAGTATTAA
CTACATTAAGAACAAAAAAAGACACTCTAGAAAATAACACATGAAATACG
AGAAATAAAAGGAAATATGGGCAATATAGCACAGGTAGTTAATAGACGAC
GGCTCAAGCACCCATTTATTTCAAAGAAACTTATTACTAAGTCGTAGACT
CCTCTTCTCAAGCATGGCTATGGTACATTGGAAGCTTGTTAAATGCATGG
CTTGTTGCTCGTCTCTAGGATGCATGGGCAAGCACTCTACTTATAGAACT
CCATAACCCAGAAATTACCAGTAACAAGATCAGATCTGATCCCACTAAAA
CCAGCGCCAGTAGCCAGGGGCGTGAATTCATGCTTTGTTCTCTCCTTTCC
ACCGGGATTTTGAGTCATCATAAGCACGTCAATATGGGAATTTGATTTTG
ATTCAATGCTTGTATTAGGAACTTCTGGAAGCATTAACTCCACAACGATT
ACCTTTCCATCTTCTGGAACGCTTTTGTAGCAATTCTTCAACAACTTCAA
GCAATGTTCATCGTCCCAAT
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