CF835232

Overview
NameCF835232
Unique NameCF835232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:411..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC10_ORYSJ (Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC10 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.095e-17
Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = -3
Query:  149 PPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 541
            PP N N + G+ V +L  N +V+V+LQ+ + +    +E+HP HLHG DF+V+G+G G +                   V  P G W A+RF ADNPG W  HCH+E H   G+ +     V   G +P Q L
Sbjct:  443 PPNNTNVSNGTRVVVLPYNASVEVVLQDTSILG---AESHPLHLHGFDFFVVGQGTGNYDPSKHPAEFNLVDPVQRNTVGVPAGGWVAIRFFADNPGVWFMHCHLEVHTTWGLKMA---WVVNDGPLPEQKL 568          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC13_ARATH (Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.440e-17
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = -3
Query:  197 TLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKE-DEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 520
            T G+  Y L  N+ V +ILQ+ + +    +E HP HLHG++F+V+G G G F    D            NT    P GW A+RFVA+NPGAW  HCHI+ H   G+ +V
Sbjct:  441 TRGTKAYKLKFNSQVQIILQDTSIVT---TENHPMHLHGYEFYVVGTGVGNFNPNTDTSSFNLIDPPRRNTIGTPPGGWVAIRFVANNPGAWLMHCHIDSHIFWGLAMV 546          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC14_ARATH (Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.186e-17
Identity = 46/110 (41.82%), Postives = 61/110 (55.45%), Query Frame = -3
Query:  197 TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 523
            T  G+ V +L  N++V++ILQ       N+   HP HLHG++F+V+G G G F +  +            T V  P  GWTA+RFVA+NPG W  HCHIE H   GM  V
Sbjct:  440 TRFGTKVVVLDYNSSVELILQGTTVWASNI---HPIHLHGYNFYVVGSGFGNFDRRKDPLRYNLVDPPEETTVGVPRNGWTAVRFVANNPGVWLLHCHIERHATWGMNTV 546          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC11_ARATH (Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.186e-17
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = -3
Query:  206 PPENFWNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGM 580
            PP+ F   Y  +    N  T+ G+ +  +  NTT++++LQ+ N +     E+HP+HLHG++F+V+G G G F  K+D            NT  +   GW A+RF ADNPG W  HCH+E H   G+
Sbjct:  411 PPKAF--NYTGVPLTANLGTSTGTRLSRVKFNTTIELVLQDTNLLTV---ESHPFHLHGYNFFVVGTGVGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFRADNPGVWFMHCHLEVHTMWGL 531          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC3_ARATH (Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = -3
Query:  197 GSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 514
            G+  Y L   + V ++LQ+ + + P   E HP HLHG+ F+V+G G G F  + D            NT    P GW A+RFVADNPGAW  HCHI+ H   G+ +V
Sbjct:  444 GTKAYKLKYKSNVQIVLQDTSIVTP---ENHPMHLHGYQFYVVGSGFGNFNPRTDPARFNLFDPPERNTIGTPPGGWVAIRFVADNPGAWFMHCHIDSHLGWGLAMV 547          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC22_ORYSJ (Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.161e-17
Identity = 49/131 (37.40%), Postives = 67/131 (51.15%), Query Frame = -3
Query:  149 PVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 538
            P N  T  G+ VY L  N +V V+LQ+   I P   E+HP HLHG +F+V+G+G G +                   +  P G WTA+RF +DNPG W  HCH E   H   G+ +A  V+  G  P++ L
Sbjct:  430 PKNLQTMNGTRVYRLPYNASVQVVLQDTGIISP---ESHPIHLHGFNFFVVGKGVGNYNPRTSPSTFNLIDPIERNTIGVPTGGWTAIRFRSDNPGVWFMHCHFE--VHTSWGLKMAFVVDN-GKRPSETL 554          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC4_ORYSJ (Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.435e-17
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = -3
Query:  149 PPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 541
            PP N N   G+ + +L  NT+V++++Q+ + +     E+HP HLHG +F+V+G+G G +   ++              V  P G W A+RF+ADNPG W  HCH+E H   G+ +   +     G+ PNQ L
Sbjct:  444 PPNNTNVKTGTKLLVLRYNTSVELVMQDTSILG---IESHPLHLHGFNFFVIGQGFGNYDAVNDPAKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV---LDGSHPNQKL 569          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC12_ARATH (Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.435e-17
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = -3
Query:  200 GSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGV 514
            G+ +Y L   + V V+LQ+ N +    SE HP HLHG+DF+++G G G F  K+D            NT  +   GW  +RFVADNPG W  HCH++ H   G+ +
Sbjct:  439 GTKLYKLKYGSRVQVVLQDTNIVT---SENHPIHLHGYDFYIVGEGFGNFNPKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVWLMHCHLDVHIKWGLAM 541          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC9_ARATH (Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.211e-16
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = -3
Query:  206 SGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTK-EDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGM 511
            + V  +  N+TV+++LQN   + P   E+HP HLHG +F+VLG G G +    D            NT  + P GW  LRF+A+NPG W FHCH++ H  +G+
Sbjct:  443 TSVKTIRFNSTVEIVLQNTGILTP---ESHPMHLHGFNFYVLGYGFGNYDPIRDARKLNLFNPQMHNTVGVPPGGWVVLRFIANNPGIWLFHCHMDAHLPLGI 542          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC4_ARATH (Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.211e-16
Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = -3
Query:  149 NANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 532
            N  T  G+ +Y L  N TV ++LQ+   I P   E HP HLHG +F+ +GRG G F    +              +  P G W  +RF ADNPG W  HCH+E   H   G+ +A  VE  G  PNQ++
Sbjct:  426 NMATETGTRLYKLPYNATVQLVLQDTGVIAP---ENHPVHLHGFNFFEVGRGLGNFNSTKDPKNFNLVDPVERNTIGVPSGGWVVIRFRADNPGVWFMHCHLE--VHTTWGLKMAFLVEN-GKGPNQSI 548          
The following BLAST results are available for this feature:
BLAST of CF835232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LAC10_ORYSJ1.095e-1737.12Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC13_ARATH2.440e-1741.28Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 S... [more]
LAC14_ARATH3.186e-1741.82Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 S... [more]
LAC11_ARATH3.186e-1737.30Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 S... [more]
LAC3_ARATH4.161e-1741.12Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=... [more]
LAC22_ORYSJ4.161e-1737.40Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC4_ORYSJ5.435e-1734.85Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 ... [more]
LAC12_ARATH5.435e-1739.62Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 S... [more]
LAC9_ARATH1.211e-1639.81Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=... [more]
LAC4_ARATH1.211e-1637.98Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835232 ID=CF835232; Name=CF835232; organism=Citrus sinensis; type=EST; length=582bp
TTTTTTTTTTTTTTTATTCACTCCGAAATTTTATTAATATAAATCCCTTT
ACAACAATAGAAACTCCAGGAATAAAGTACATAAAACCATCTAGCTAGCC
TCAATTTTGTTTAGGGTTCATGAACCTTTTCCCAGTCAAACCACAAGCCA
ACGCCTGGTTTGGAATATTACCAACGGTTTCAACACCAAGAGCAAGAACC
ACACCCATTCCAATATGGAAATGGGGCTCAATATGGCAGTGAAATGCCCA
AGCACCTGGATTATCAGCAACAAATCTTAAAGCAGTCCAGCCATATGGGA
ATATCACCGCAGTATTTTTCAATGGTGGATTCTTCAAGTTAAATTTCTTC
TCATCTTCTTTCGTAAACTTCCCTTCTCCGCGCCCTAATACCCAAAAATC
ATGCCCATGCAAATGCCAAGGGTGGGTTTCACTCAAGTTTGGCCTTATCG
CGTTTGCATTTTGAAGTATAACATCAACTGTGGTGTTTAAACCAAGCATG
TAAACCCCACTTCCAAGAGTTGTATTAGCGTTTACAGGAGGTTTCATCAC
GTCATACTCATTCCAGAAGTTTTCGGGGGGAC
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