CF835232

Overview
NameCF835232
Unique NameCF835232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:411..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC6_ORYSJ (Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.087e-15
Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = -3
Query:  197 PVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKE--DEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 538
            P+ +  +  + V  L  N TV+++LQN   +     E+HP HLHG +F+V+ +G G    E               NT  +   GW  +RFVADNPG WA HCHI+ HF IG+ +V
Sbjct:  445 PLASTGSPSTKVKTLRYNATVEMVLQNTALVG---LESHPMHLHGFNFFVVAQGFGNNDGEAAGAGEFNLVNPQERNTVAVPTGGWAVIRFVADNPGMWAMHCHIDSHFAIGLAMV 557          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC9_ORYSJ (Putative laccase-9 OS=Oryza sativa subsp. japonica GN=LAC9 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 46/121 (38.02%), Postives = 58/121 (47.93%), Query Frame = -3
Query:  197 PPVNAN-----TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 541
            PPVN       T  G+ V +L   T V+V+  + +      SE HP HLHG  F+V+GRG G F +  +              V  P  GW A+RF ADNPG W  HCH + H   GM  V
Sbjct:  442 PPVNNGSGPLMTKRGTKVKVLEYGTVVEVVFHDLS------SENHPMHLHGFAFYVVGRGNGTFDESRDPATYNLVDPPFQNTVSVPRSGWAAIRFRADNPGVWFMHCHFDRHVVWGMDTV 556          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC23_ORYSJ (Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC23 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 40/106 (37.74%), Postives = 52/106 (49.06%), Query Frame = -3
Query:  200 GSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGV 514
            G+ VY L   + V V+LQ  N       E HP HLHG+DF++L  G G F    +              V  P  GW  +RFVADNPG W  HCH++ H   G+ +
Sbjct:  441 GTKVYKLKYGSAVQVVLQGTNIFA---GENHPIHLHGYDFYILAEGLGNFDAGADTAKFNMEDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 543          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC17_ORYSJ (Putative laccase-17 OS=Oryza sativa subsp. japonica GN=LAC17 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 40/106 (37.74%), Postives = 52/106 (49.06%), Query Frame = -3
Query:  200 GSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGV 514
            G+ VY L   + V V+LQ  N       E HP HLHG+DF++L  G G F    +              V  P  GW  +RFVADNPG W  HCH++ H   G+ +
Sbjct:  441 GTKVYKLKYGSAVQVVLQGTNIFA---GENHPIHLHGYDFYILAEGLGNFDAGADTGKFNVEDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 543          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSJ (Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = -3
Query:  149 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 487
            NT+V++I Q++  +   +S+++P HLHG+D ++L +G G F  + +              ++ P G W A+RF+ DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  460 NTSVEIIFQSSTLL---MSDSNPMHLHGYDVFLLAQGLGSFNAKRDIRKFNYHNPQLRNTILVPRGGWAAVRFITDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 567          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSI (Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = -3
Query:  149 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 487
            NT+V++I Q++  +   +S+++P HLHG+D ++L +G G F  + +              ++ P G W A+RF+ DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  460 NTSVEIIFQSSTLL---MSDSNPMHLHGYDVFLLAQGLGSFNAKRDIRKFNYHNPQLRNTILVPRGGWAAVRFITDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 567          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC15_ORYSJ (Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC15 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.677e-15
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = -3
Query:  197 TVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF-TKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 481
            TVDV+ Q+   ++    +++P HLHGHD ++L +G G +    DE           NT ++   GW A+RFVADNPGAW  HCH E H  +GM  V
Sbjct:  487 TVDVVFQSTAMLQ---GDSNPMHLHGHDVFLLAQGIGIYDAARDEGKFNLVNPPRKNTVLVPNLGWAAVRFVADNPGAWLMHCHFEFHLSMGMAAV 579          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC8_ORYSJ (Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14
Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = -3
Query:  197 PPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 541
            PP        + V  +  N  V+V+LQ+        +E HP HLHG DF++L +G G+F    +           NT  +   GW  +RF+A+NPG W  HCH++ H  +G+ +V
Sbjct:  416 PPPMQGFRKATAVKKVKYNDVVEVVLQSEQYSSTLGTENHPIHLHGFDFYLLAQGLGRFNPSMKSKYNLVDPQVRNTVAVPAGGWAVIRFMANNPGMWFMHCHLDAHLPLGLAMV 530          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSJ (Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC19 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = -3
Query:  149 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 487
            NT+V++I Q+   ++   S+++P HLHG+D ++L +G G F  K D            NT  +   GW A+RFV DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  465 NTSVEIIFQSTTLMQ---SDSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 572          
BLAST of CF835232 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSI (Putative laccase-19 OS=Oryza sativa subsp. indica GN=LAC19 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = -3
Query:  149 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 487
            NT+V++I Q+   ++   S+++P HLHG+D ++L +G G F  K D            NT  +   GW A+RFV DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  465 NTSVEIIFQSTTLMQ---SDSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 572          
The following BLAST results are available for this feature:
BLAST of CF835232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LAC6_ORYSJ5.087e-1537.93Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 ... [more]
LAC9_ORYSJ6.644e-1538.02Putative laccase-9 OS=Oryza sativa subsp. japonica... [more]
LAC23_ORYSJ6.644e-1537.74Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC17_ORYSJ6.644e-1537.74Putative laccase-17 OS=Oryza sativa subsp. japonic... [more]
LAC20_ORYSJ8.677e-1536.84Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC20_ORYSI8.677e-1536.84Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 ... [more]
LAC15_ORYSJ8.677e-1541.67Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC8_ORYSJ1.133e-1433.04Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 ... [more]
LAC19_ORYSJ2.525e-1440.35Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC19_ORYSI2.525e-1440.35Putative laccase-19 OS=Oryza sativa subsp. indica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835232 ID=CF835232; Name=CF835232; organism=Citrus sinensis; type=EST; length=582bp
TTTTTTTTTTTTTTTATTCACTCCGAAATTTTATTAATATAAATCCCTTT
ACAACAATAGAAACTCCAGGAATAAAGTACATAAAACCATCTAGCTAGCC
TCAATTTTGTTTAGGGTTCATGAACCTTTTCCCAGTCAAACCACAAGCCA
ACGCCTGGTTTGGAATATTACCAACGGTTTCAACACCAAGAGCAAGAACC
ACACCCATTCCAATATGGAAATGGGGCTCAATATGGCAGTGAAATGCCCA
AGCACCTGGATTATCAGCAACAAATCTTAAAGCAGTCCAGCCATATGGGA
ATATCACCGCAGTATTTTTCAATGGTGGATTCTTCAAGTTAAATTTCTTC
TCATCTTCTTTCGTAAACTTCCCTTCTCCGCGCCCTAATACCCAAAAATC
ATGCCCATGCAAATGCCAAGGGTGGGTTTCACTCAAGTTTGGCCTTATCG
CGTTTGCATTTTGAAGTATAACATCAACTGTGGTGTTTAAACCAAGCATG
TAAACCCCACTTCCAAGAGTTGTATTAGCGTTTACAGGAGGTTTCATCAC
GTCATACTCATTCCAGAAGTTTTCGGGGGGAC
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