CF835242

Overview
NameCF835242
Unique NameCF835242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6351 contig Csv1_Contig6351:227..453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO2_RAT (Small ubiquitin-related modifier 2 OS=Rattus norvegicus GN=Sumo2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO2_PIG (Small ubiquitin-related modifier 2 OS=Sus scrofa GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO2_MOUSE (Small ubiquitin-related modifier 2 OS=Mus musculus GN=Sumo2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO2_MACFA (Small ubiquitin-related modifier 2 OS=Macaca fascicularis GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO2_HUMAN (Small ubiquitin-related modifier 2 OS=Homo sapiens GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO2_CRIGR (Small ubiquitin-related modifier 2 OS=Cricetulus griseus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO2_CHICK (Small ubiquitin-related modifier 2 OS=Gallus gallus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO2_BOVIN (Small ubiquitin-related modifier 2 OS=Bos taurus GN=SUMO2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = -3
Query:   22 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGGM 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG+
Sbjct:   27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 94          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SMO2A_XENLA (Small ubiquitin-related modifier 2-A OS=Xenopus laevis GN=sumo2-A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = -3
Query:   25 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG
Sbjct:   27 GSVVQFKIKRQTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO_CAEEL (Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = -3
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            NEV FR+K  T + K+  +Y DR  V +NS+ FLFDGRR+  + TP  LEMED + I+    Q GG
Sbjct:   25 NEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90          
The following BLAST results are available for this feature:
BLAST of CF835242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SUMO2_RAT1.173e-1147.06Small ubiquitin-related modifier 2 OS=Rattus norve... [more]
SUMO2_PIG1.173e-1147.06Small ubiquitin-related modifier 2 OS=Sus scrofa G... [more]
SUMO2_MOUSE1.173e-1147.06Small ubiquitin-related modifier 2 OS=Mus musculus... [more]
SUMO2_MACFA1.173e-1147.06Small ubiquitin-related modifier 2 OS=Macaca fasci... [more]
SUMO2_HUMAN1.173e-1147.06Small ubiquitin-related modifier 2 OS=Homo sapiens... [more]
SUMO2_CRIGR1.173e-1147.06Small ubiquitin-related modifier 2 OS=Cricetulus g... [more]
SUMO2_CHICK1.173e-1147.06Small ubiquitin-related modifier 2 OS=Gallus gallu... [more]
SUMO2_BOVIN1.173e-1147.06Small ubiquitin-related modifier 2 OS=Bos taurus G... [more]
SMO2A_XENLA1.173e-1147.76Small ubiquitin-related modifier 2-A OS=Xenopus la... [more]
SUMO_CAEEL1.532e-1148.48Small ubiquitin-related modifier OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835242 ID=CF835242; Name=CF835242; organism=Citrus sinensis; type=EST; length=227bp
ATTACCTAATTAGAACATCAGCATTCCTCCGGTTTGGAGCAGCATGGCAT
CAATCTCCTCGCCATCTTCCATTTCCAGCTCATCAGGGGTTTGCTCTCCT
CGAAGACGGCGACCATCAAACAAGAAGGCAATTGAGTTCAGCTCCACAGA
TTGCCTATCACAGTATGCATTCATAACCTTCTTTACTTGGGTGCTTCGCT
TGATCCGGAAGAAAACCTCATTCCCAT
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