CF835242

Overview
NameCF835242
Unique NameCF835242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6351 contig Csv1_Contig6351:227..453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO3_RAT (Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = -3
Query:   25 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG
Sbjct:   26 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = -3
Query:   25 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG
Sbjct:   26 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = -3
Query:   25 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG
Sbjct:   26 GSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO3_BOVIN (Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = -3
Query:   25 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG
Sbjct:   26 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO2_XENTR (Small ubiquitin-related modifier 2 OS=Xenopus tropicalis GN=sumo2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = -3
Query:   25 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG
Sbjct:   27 GSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SMO3L_DANRE (Small ubiquitin-related modifier 3-like OS=Danio rerio GN=sumo3l PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = -3
Query:   25 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG
Sbjct:   26 GSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SMO2B_XENLA (Small ubiquitin-related modifier 2-B OS=Xenopus laevis GN=sumo2-B PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.532e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = -3
Query:   25 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG
Sbjct:   27 GSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO2_DANRE (Small ubiquitin-related modifier 2 OS=Danio rerio GN=sumo2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = -3
Query:   25 GNEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 225
            G+ V F+IKR T + K+M AYC+RQ + +  I F FDG+ +    TP +LEMED + ID    QTGG
Sbjct:   27 GSVVQFKIKRHTPLSKLMKAYCERQGLTMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO1_SPETR (Small ubiquitin-related modifier 1 OS=Spermophilus tridecemlineatus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = -3
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ + I+    QTGG
Sbjct:   32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO1_RAT (Small ubiquitin-related modifier 1 OS=Rattus norvegicus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = -3
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ + I+    QTGG
Sbjct:   32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
The following BLAST results are available for this feature:
BLAST of CF835242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SUMO3_RAT1.532e-1147.76Small ubiquitin-related modifier 3 OS=Rattus norve... [more]
SUMO3_MOUSE1.532e-1147.76Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SUMO3_DANRE1.532e-1147.76Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]
SUMO3_BOVIN1.532e-1147.76Small ubiquitin-related modifier 3 OS=Bos taurus G... [more]
SUMO2_XENTR1.532e-1147.76Small ubiquitin-related modifier 2 OS=Xenopus trop... [more]
SMO3L_DANRE1.532e-1147.76Small ubiquitin-related modifier 3-like OS=Danio r... [more]
SMO2B_XENLA1.532e-1147.76Small ubiquitin-related modifier 2-B OS=Xenopus la... [more]
SUMO2_DANRE2.001e-1147.76Small ubiquitin-related modifier 2 OS=Danio rerio ... [more]
SUMO1_SPETR2.614e-1143.94Small ubiquitin-related modifier 1 OS=Spermophilus... [more]
SUMO1_RAT2.614e-1143.94Small ubiquitin-related modifier 1 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835242 ID=CF835242; Name=CF835242; organism=Citrus sinensis; type=EST; length=227bp
ATTACCTAATTAGAACATCAGCATTCCTCCGGTTTGGAGCAGCATGGCAT
CAATCTCCTCGCCATCTTCCATTTCCAGCTCATCAGGGGTTTGCTCTCCT
CGAAGACGGCGACCATCAAACAAGAAGGCAATTGAGTTCAGCTCCACAGA
TTGCCTATCACAGTATGCATTCATAACCTTCTTTACTTGGGTGCTTCGCT
TGATCCGGAAGAAAACCTCATTCCCAT
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