CF835242

Overview
NameCF835242
Unique NameCF835242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6351 contig Csv1_Contig6351:227..453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO1_PONAB (Small ubiquitin-related modifier 1 OS=Pongo abelii GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = -3 
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ + I+    QTGG
Sbjct:   32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
[Close]
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO1_PIG (Small ubiquitin-related modifier 1 OS=Sus scrofa GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = -3 
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ + I+    QTGG
Sbjct:   32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
[Close]
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO1_MOUSE (Small ubiquitin-related modifier 1 OS=Mus musculus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = -3 
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ + I+    QTGG
Sbjct:   32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
[Close]
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO1_HUMAN (Small ubiquitin-related modifier 1 OS=Homo sapiens GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = -3 
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ + I+    QTGG
Sbjct:   32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
[Close]
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO1_CHICK (Small ubiquitin-related modifier 1 OS=Gallus gallus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = -3 
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ + I+    QTGG
Sbjct:   32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRITDNHTPKELGMEEEDVIEVYQEQTGG 97
[Close]
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO1_BOVIN (Small ubiquitin-related modifier 1 OS=Bos taurus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = -3 
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ + I+    QTGG
Sbjct:   32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
[Close]
BLAST of CF835242 vs. ExPASy Swiss-Prot
Match: SUMO1_CERNI (Small ubiquitin-related modifier 1 OS=Cervus nippon GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.414e-11
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = -3 
Query:   25 NEVFFRIKRSTQVKKVMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGEEIDAMLLQTGG 222
            +E+ F++K +T +KK+  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ + I+    QTGG
Sbjct:   32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYHEQTGG 97
The following BLAST results are available for this feature:
BLAST of CF835242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SUMO1_PONAB2.614e-1143.94Small ubiquitin-related modifier 1 OS=Pongo abelii... [more]
SUMO1_PIG2.614e-1143.94Small ubiquitin-related modifier 1 OS=Sus scrofa G... [more]
SUMO1_MOUSE2.614e-1143.94Small ubiquitin-related modifier 1 OS=Mus musculus... [more]
SUMO1_HUMAN2.614e-1143.94Small ubiquitin-related modifier 1 OS=Homo sapiens... [more]
SUMO1_CHICK2.614e-1143.94Small ubiquitin-related modifier 1 OS=Gallus gallu... [more]
SUMO1_BOVIN2.614e-1143.94Small ubiquitin-related modifier 1 OS=Bos taurus G... [more]
SUMO1_CERNI3.414e-1143.94Small ubiquitin-related modifier 1 OS=Cervus nippo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835242 ID=CF835242; Name=CF835242; organism=Citrus sinensis; type=EST; length=227bp
ATTACCTAATTAGAACATCAGCATTCCTCCGGTTTGGAGCAGCATGGCAT
CAATCTCCTCGCCATCTTCCATTTCCAGCTCATCAGGGGTTTGCTCTCCT
CGAAGACGGCGACCATCAAACAAGAAGGCAATTGAGTTCAGCTCCACAGA
TTGCCTATCACAGTATGCATTCATAACCTTCTTTACTTGGGTGCTTCGCT
TGATCCGGAAGAAAACCTCATTCCCAT
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