CF835279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECOSM (Carnitine operon protein caiE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiE PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ R ++ G PA+ +R Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLLVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVR 142
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLU (Carnitine operon protein caiE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiE PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ R ++ G PA+ +R Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVR 142
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL6 (Carnitine operon protein caiE OS=Escherichia coli O6 GN=caiE PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ R ++ G PA+ +R Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVR 142
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL5 (Carnitine operon protein caiE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiE PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ R ++ G PA+ +R Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVR 142
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECOK1 (Carnitine operon protein caiE OS=Escherichia coli O1:K1 / APEC GN=caiE PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ R ++ G PA+ +R Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVR 142
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECO81 (Carnitine operon protein caiE OS=Escherichia coli O81 (strain ED1a) GN=caiE PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ R ++ G PA+ +R Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVR 142
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECO45 (Carnitine operon protein caiE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=caiE PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ R ++ G PA+ +R Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVR 142
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECO27 (Carnitine operon protein caiE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiE PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ R ++ G PA+ +R Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVR 142
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLI (Carnitine operon protein caiE OS=Escherichia coli (strain K12) GN=caiE PE=3 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ R ++ G PA+ +R Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVR 142
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECODH (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / DH10B) GN=caiE PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19 Identity = 54/138 (39.13%), Postives = 75/138 (54.35%), Query Frame = 2 Query: 263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676 P V AFV PSA +IGDV VG G I LRGD + V +G NIQD ++H T +G+N +GH A+LHGC + +A VGM + ++DG V+ +VAA S V+ R ++ G PA+ +R Sbjct: 11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVR 142 The following BLAST results are available for this feature:
BLAST of CF835279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835279 ID=CF835279; Name=CF835279; organism=Citrus sinensis; type=EST; length=677bpback to top |