CF835279

Overview
NameCF835279
Unique NameCF835279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1097 contig Csv1_Contig1097:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECO24 (Carnitine operon protein caiE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_SHIFL (Carnitine operon protein caiE OS=Shigella flexneri GN=caiE PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_SHIF8 (Carnitine operon protein caiE OS=Shigella flexneri serotype 5b (strain 8401) GN=caiE PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ESCF3 (Carnitine operon protein caiE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=caiE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_SALCH (Carnitine operon protein caiE OS=Salmonella choleraesuis GN=caiE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V  DAFV PSA +IGDV VG G  I     LRGD     + +G+N+QD  ++H            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRQILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLC (Carnitine operon protein caiE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.903e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PIVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLIGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_SALPB (Carnitine operon protein caiE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+Q   ++H            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQYGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_SHIDS (Carnitine operon protein caiE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiE PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 52/138 (37.68%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IG V VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGYVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_PROSL (Carnitine operon protein caiE OS=Proteus sp. (strain LE138) GN=caiE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   A++ PSA +IGDV +G G  I     LRGD   + V +G N+QD  ++H          + T + +N  +GH A+LH C +  ++ VGM + ++DG ++    +VAA S V+   +  + ++  G+PAK +R
Sbjct:   11 PVVHPTAYIHPSAVLIGDVIIGAGVYIGPLASLRGDYGRLIVEAGANLQDGCVMHGYTD------MDTIVQENGHIGHGAILHSCIIGRDSLVGMNSVIMDGAIIGEESIVAAMSFVKAGFQGQARQMLMGSPAKHVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_CITK8 (Carnitine operon protein caiE OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.232e-16
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V  +A+V PSA +IGDV VG G  I     LRGD   + + +G N+QD  ++H            T + +N  +GH A+LHGC +  +A VGM + ++DG ++    +VAA S V+        ++  G PA+  R
Sbjct:   11 PVVHPEAYVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGANLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVIGRDALVGMNSVIMDGAIIGEESIVAAMSFVKAGFVGAPRQLLVGAPARVKR 142          
The following BLAST results are available for this feature:
BLAST of CF835279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_ECO241.752e-1838.41Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SHIFL2.288e-1838.41Carnitine operon protein caiE OS=Shigella flexneri... [more]
CAIE_SHIF82.288e-1838.41Carnitine operon protein caiE OS=Shigella flexneri... [more]
CAIE_ESCF32.288e-1838.41Carnitine operon protein caiE OS=Escherichia fergu... [more]
CAIE_SALCH2.989e-1838.41Carnitine operon protein caiE OS=Salmonella choler... [more]
CAIE_ECOLC3.903e-1838.41Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SALPB8.696e-1837.68Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_SHIDS1.937e-1737.68Carnitine operon protein caiE OS=Shigella dysenter... [more]
CAIE_PROSL1.256e-1633.33Carnitine operon protein caiE OS=Proteus sp. (stra... [more]
CAIE_CITK86.232e-1634.78Carnitine operon protein caiE OS=Citrobacter koser... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835279 ID=CF835279; Name=CF835279; organism=Citrus sinensis; type=EST; length=677bp
CTCTCACACAACACACCTTCGCTCAACTTAAGAAACCCAAAACCTCACTG
AACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGATCCCCAAAGCCAA
CAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCGTTGGCTTCTGGAT
TCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGCCGTCTCCAAGGCA
ACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAACTCTCATGAACATA
TTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTGTTGCTCCAAGTGC
CTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTTGGTATG
GATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGTTGGATCAGGAACA
AATATACAGGACAACTCCCTTGTGCATGTTGCGAAGTCTAATCTAAGTGG
GAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTAGGCCATAGTG
CTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTTTGTTGGCATGGGA
GCAACACTACTTGATGGTGTTGTTGTTGAGAGACATGGCATGGTTGCTGC
TGGATCTCTTGTGAGGCAGAATACCAGGATCCCTTCTGGAGAGGTATGGG
GAGGCAATCCAGCAAAGTTCCTGAGAA
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