CF835317

Overview
NameCF835317
Unique NameCF835317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:524..1372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: THS4_VITVI (Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT00005194001 PE=3 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 5.595e-90
Identity = 167/230 (72.61%), Postives = 186/230 (80.87%), Query Frame = -2
Query:  159 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 848
            M+Y QGC+AGGTVLR AKDLAENN GARVLVVCSEIT VTFRGP++  LDSLVGQALF           DPD S+ERPL+QLVS +QT +P+S GAI G+LREVGLTFHL  +VP LIS+NIE  L++AF P+GISDWNS+FWIAHPGGPAILD V           KATR +LSEYGNMSSACVLFILDEMRKKS +E K TTGEGLDWGVLFGFGPGLT+ETVVLHSV
Sbjct:  158 MLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENIENCLTKAFDPIGISDWNSLFWIAHPGGPAILDAVEAKVGLDKQKLKATRHILSEYGNMSSACVLFILDEMRKKSLKEGKTTTGEGLDWGVLFGFGPGLTIETVVLHSV 387          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: ACS4_RUTGR (Probable acridone synthase 4 OS=Ruta graveolens GN=ACS4 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.246e-89
Identity = 163/234 (69.66%), Postives = 188/234 (80.34%), Query Frame = -2
Query:  147 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            M+Y QGC+AGGTVLRLAKDLAENNKG+RVLVVCSE+TA TFRGP+   +DSLVGQALF           DPD+S+ER LY LVS SQ +LPDSDGAI+GH+RE GLT HL KDVP L S NI+  L EAF P+GISDWNSIFWIAHPGGPAILDQ+           +A++ V+SEYGNMSS+CVLF+LDEMR +S ++ K+TTGEGLDWGVLFGFGPGLTVETVVL SVPI+A
Sbjct:  158 MVYQQGCYAGGTVLRLAKDLAENNKGSRVLVVCSELTAPTFRGPSPDAVDSLVGQALFADGAAALVVGADPDSSIERALYYLVSASQMLLPDSDGAIEGHIREEGLTVHLKKDVPALFSANIDTPLVEAFKPLGISDWNSIFWIAHPGGPAILDQIEEKLGLKEDKLRASKHVMSEYGNMSSSCVLFVLDEMRSRSLQDGKSTTGEGLDWGVLFGFGPGLTVETVVLRSVPIEA 391          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: ACS3_RUTGR (Probable acridone synthase 3 OS=Ruta graveolens GN=ACS3 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 2.126e-89
Identity = 162/234 (69.23%), Postives = 188/234 (80.34%), Query Frame = -2
Query:  147 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            M+Y QGC+AGGTVLRLAKDLAENNKG+RVLVVCSE+TA TFRGP+   +DSLVGQALF           DPD+S+ER LY LVS SQ +LPDSDGAI+GH+RE GLT HL KDVP L S NI+  L EAF P+GISDWNSIFWIAHPGGPAILDQ+           +A++ V+SEYGNMSS+CVLF+LDEMR +S ++ K+TTGEGLDWGVLFGFGPGLTVET+VL SVPI+A
Sbjct:  158 MIYQQGCYAGGTVLRLAKDLAENNKGSRVLVVCSELTAPTFRGPSPDAVDSLVGQALFADGAAALVVGADPDSSIERALYYLVSASQMLLPDSDGAIEGHIREEGLTVHLKKDVPALFSGNIDTPLVEAFKPLGISDWNSIFWIAHPGGPAILDQIEEKLGLKEDKLRASKHVMSEYGNMSSSCVLFVLDEMRSRSLQDGKSTTGEGLDWGVLFGFGPGLTVETIVLRSVPIEA 391          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHS2_HORVU (Chalcone synthase 2 OS=Hordeum vulgare GN=CHS2 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.626e-89
Identity = 163/232 (70.26%), Postives = 187/232 (80.60%), Query Frame = -2
Query:  153 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            MMY QGCF G TVLRLAKD+AENN+GARVLVVCSEITA+ FRGP  +HLDSLVG ALF           DPD   E+P++QLVS SQTILP+S+GAIDGHL E GLT HLLKDVPGLIS+NIE++L +AF P+GI +WNSIFWIAHPGGPAILD+V           +A+R+VLSEYGNMSSA VLF+LD MRK SA++  ATTGEG DWGVLFGFGPGLTVET+VLHSVP+
Sbjct:  160 MMYQQGCFGGATVLRLAKDIAENNRGARVLVVCSEITAMAFRGPCKSHLDSLVGHALFGDGAAAAIIGADPDQLDEQPVFQLVSASQTILPESEGAIDGHLTEAGLTIHLLKDVPGLISENIEQALEDAFEPLGIHNWNSIFWIAHPGGPAILDRVEDRVGLDKKRMRASREVLSEYGNMSSASVLFVLDVMRKSSAKDGLATTGEGKDWGVLFGFGPGLTVETLVLHSVPV 391          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: VPS_HUMLU (Phloroisovalerophenone synthase OS=Humulus lupulus GN=VPS PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 4.009e-88
Identity = 159/232 (68.53%), Postives = 190/232 (81.90%), Query Frame = -2
Query:  156 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 848
            M+Y  GC+AGG VLR+AKD+AENNKGARVL+VCSEITA  FRGP++ HLD LVGQ+LF           DPD SV ERP+++LVS +QTILP+SDGAI GH+ E GLTFHLL+DVPGLIS+NIEKSL EAF P+GI+DWN+IFWIAHPGGPAILD++           KA+R++LSEYGNMS A V FI+DEMRK+S++E K+TTG+GL+WG LFGFGPGLTVETVVLHSVP
Sbjct:  160 MLYQLGCYAGGKVLRIAKDIAENNKGARVLIVCSEITACIFRGPSEKHLDCLVGQSLFGDGASSVIVGADPDASVGERPIFELVSAAQTILPNSDGAIAGHVTEAGLTFHLLRDVPGLISQNIEKSLIEAFTPIGINDWNNIFWIAHPGGPAILDEIEAKLELKKEKMKASREMLSEYGNMSCASVFFIVDEMRKQSSKEGKSTTGDGLEWGALFGFGPGLTVETVVLHSVP 391          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHSD_PETHY (Chalcone synthase D OS=Petunia hybrida GN=CHSD PE=3 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 4.149e-85
Identity = 161/230 (70.00%), Postives = 177/230 (76.96%), Query Frame = -2
Query:  159 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 848
            MM   GCFAGGTVLRLAKDLAENNKGARVLVVCSEIT VTFRGP DTH DSLVGQALF           DP  +VERPL++LVS +QT+LPDS  +I G LRE+GLTFHLLKDV  LIS NIEKSL E F P+GIS WNSIFW+AHPGGPAIL+QV            ATR VLSEYGNMSSA +LF+LDEMRK S ++   TTGEGL WGVL GFGPG+T ET+VLHSV
Sbjct:  158 MMNQLGCFAGGTVLRLAKDLAENNKGARVLVVCSEITVVTFRGPNDTHFDSLVGQALFGDGAAAVIIGSDPIPNVERPLFELVSAAQTLLPDSKNSICGELREIGLTFHLLKDVAELISNNIEKSLVEVFQPLGISAWNSIFWVAHPGGPAILNQVELKLGLNPEKLGATRHVLSEYGNMSSASILFVLDEMRKSSTQKGFDTTGEGLKWGVLIGFGPGITFETIVLHSV 387          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 2.059e-84
Identity = 161/232 (69.40%), Postives = 180/232 (77.59%), Query Frame = -2
Query:  153 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF           DP   VE PL+++VST Q ++P+S GAI G LREVGLTF+L K VP +IS+NI  +LS+AF P+GISD+NSIFWIAHPGGPAILDQV            ATR VLS YGNMSSACV FI+D MRKKS EE   TTGEGLDWGVLFGFGPGLT+ETVVL SV I
Sbjct:   82 MMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALSKAFDPLGISDYNSIFWIAHPGGPAILDQVEQKVNLKPEKMNATRDVLSNYGNMSSACVFFIMDLMRKKSLEEGLKTTGEGLDWGVLFGFGPGLTIETVVLRSVAI 313          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: THS3_ARAHY (Stilbene synthase 3 OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 1.130e-82
Identity = 159/232 (68.53%), Postives = 180/232 (77.59%), Query Frame = -2
Query:  153 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF           DP   VE+P+++LVST Q ++P S GAI G LREVGLTF+L K VP +IS+NI  +L++AF P+GISD+NSIFWIAHPGG AILDQV           KATR VLS YGNMSSACV FI+D MRK+S EE   TTGEGLDWGVLFGFGPGLT+ETVVL SV I
Sbjct:  158 MMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVEKPIFELVSTDQKLVPGSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALNKAFDPLGISDYNSIFWIAHPGGRAILDQVEQKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMRKRSLEEGLKTTGEGLDWGVLFGFGPGLTIETVVLRSVAI 389          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHSY_PERAE (Chalcone synthase OS=Persea americana GN=CHS PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.635e-81
Identity = 158/235 (67.23%), Postives = 172/235 (73.19%), Query Frame = -2
Query:  156 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKK----SAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 848
            MMY QGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF           DP   VE P+++LVS  QTILPDSDGAIDGHLREVGLTFHLLK VPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILD                +   S      + C +F+      +      EE   TTGEG++WGVLFGFGPGLTVETVVLHS+P
Sbjct:  159 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAALIVGADPVPGVENPMFELVSAGQTILPDSDGAIDGHLREVGLTFHLLKVVPGLISKNIEKSLVEAFEPLGISDWNSLFWIAHPGGPAILDPGGDQTRPEARESCGNQACFSV---SMATCQVFVCSSFSTRCEGSPKEEGLKTTGEGIEWGVLFGFGPGLTVETVVLHSLP 390          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: THS1_ARAHY (Stilbene synthase 1 OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.804e-80
Identity = 157/232 (67.67%), Postives = 177/232 (76.29%), Query Frame = -2
Query:  153 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP +T +DSLVGQALF           DP   VE P++++VST Q ++P+S GAI G LREVGLTF+L K VP +IS+NI  +LS+AF P+GISD+NSIFWIAH GG AILDQV           KATR VLS YGNMSSACV FI+D MRKKS E    TTGEGLDWGVLFGFGPGLT+ETVVL S+ I
Sbjct:  158 MMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPNETDMDSLVGQALFADGAAAIIIGSDPVPEVENPIFEIVSTDQQLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINGALSKAFDPLGISDYNSIFWIAHLGGRAILDQVEQKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMRKKSLETGLKTTGEGLDWGVLFGFGPGLTIETVVLRSMAI 389          
The following BLAST results are available for this feature:
BLAST of CF835317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
THS4_VITVI5.595e-9072.61Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT000... [more]
ACS4_RUTGR1.246e-8969.66Probable acridone synthase 4 OS=Ruta graveolens GN... [more]
ACS3_RUTGR2.126e-8969.23Probable acridone synthase 3 OS=Ruta graveolens GN... [more]
CHS2_HORVU3.626e-8970.26Chalcone synthase 2 OS=Hordeum vulgare GN=CHS2 PE=... [more]
VPS_HUMLU4.009e-8868.53Phloroisovalerophenone synthase OS=Humulus lupulus... [more]
CHSD_PETHY4.149e-8570.00Chalcone synthase D OS=Petunia hybrida GN=CHSD PE=... [more]
THS2_ARAHY2.059e-8469.40Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
THS3_ARAHY1.130e-8268.53Stilbene synthase 3 OS=Arachis hypogaea PE=2 SV=1[more]
CHSY_PERAE3.635e-8167.23Chalcone synthase OS=Persea americana GN=CHS PE=2 ... [more]
THS1_ARAHY1.804e-8067.67Stilbene synthase 1 OS=Arachis hypogaea PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835317 ID=CF835317; Name=CF835317; organism=Citrus sinensis; type=EST; length=849bp
TTTTGACGTCATCAGTGAAAAGGTACGATGCCTTAAATTCAATTGACAAA
ACTAAACCTTCACACGATCAACCAATAATTCAAGAGTGAAAGCATACAAC
ATAAAGTTACTGAACTACTAAACATACTGATGGAGTTCTCACTTCAAGCT
TTGATGGGGACACTGTGCAGCACAACGGTCTCGACGGTGAGCCCCGGCCC
GAACCCGAACAGCACACCCCAATCTAGCCCTTCGCCGGTGGTGGCTTTCG
CTTCCTCAGCAGACTTCTTTCTCATCTCGTCAAGGATGAACAGGACACAA
GCGCTTGACATGTTACCGTACTCACTCAACACTTGACGTGTGGCCTTCAG
CTTCTCCTCTTTGAGGCCGAGTTTAGACTCCACTTGGTCCAGAATTGCGG
GCCCACCGGGGTGAGCGATCCAGAATATCGAGTTCCAGTCGCTGATGCCA
ACCGGGGCGAACGCTTCCGACAGGCTTTTCTCTATATTCTTTGAGATCAA
GCCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCGACTTCGCGCAAGT
GTCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGTCTGCGAAGTCGAC
ACAAGCTGATACAACGGACGCTCGACCGACGTGTCAGGATCGGCACCCAC
GATCACAGCAGCAGCACCATCACCGAACAAAGCCTGGCCCACAAGAGAAT
CAAGATGAGTATCGGCAGGGCCGCGGAAAGTGACCGCCGTGATCTCCGAA
CAGACAACAAGAACGCGAGCGCCCTTGTTGTTCTCAGCCAAGTCTTTAGC
GAGGCGAAGAACAGTGCCGCCGGCGAAACATCCTTGNTGGTACATCATG
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