CF835323

Overview
NameCF835323
Unique NameCF835323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:177..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.932e-31
Identity = 90/236 (38.14%), Postives = 123/236 (52.12%), Query Frame = -1
Query:  202 RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 852
            + VS S+    PNR  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+  G        L+Y  + +         ++  +++ +G  EG R A   +P     DP+            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   43 KPVSSSSPWYGPNRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--EPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 261          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.135e-31
Identity = 84/216 (38.89%), Postives = 115/216 (53.24%), Query Frame = -1
Query:  202 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 819
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    I         D  YPGG  FDPLG  +  PE   EL+ KE+K GRLAML++ G + Q I TG GP++NL  H+ADP +   +A  T
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYAT 259          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.135e-31
Identity = 84/203 (41.38%), Postives = 110/203 (54.19%), Query Frame = -1
Query:  202 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 783
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG  + F+D         +L   + I   WA       +I  G V    +  N  L    D+ YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  HLADP +   +A  T
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFAT 261          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.135e-31
Identity = 84/203 (41.38%), Postives = 110/203 (54.19%), Query Frame = -1
Query:  202 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 783
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG  + F+D         +L   + I   WA       +I  G V    +  N  L    D+ YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  HLADP +   +A  T
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFAT 261          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.707e-31
Identity = 90/223 (40.36%), Postives = 120/223 (53.81%), Query Frame = -1
Query:  232 TAGT-RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 864
            TAG  ++V  S+    P+R  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I         D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   38 TAGKPKTVQSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.759e-31
Identity = 82/202 (40.59%), Postives = 109/202 (53.96%), Query Frame = -1
Query:  202 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 783
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    I         D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 261          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.759e-31
Identity = 82/202 (40.59%), Postives = 108/202 (53.47%), Query Frame = -1
Query:  202 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 783
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    I         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 259          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.759e-31
Identity = 82/202 (40.59%), Postives = 108/202 (53.47%), Query Frame = -1
Query:  202 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 783
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    +         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.759e-31
Identity = 83/203 (40.89%), Postives = 110/203 (54.19%), Query Frame = -1
Query:  202 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 786
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+     SW+ AG        L+Y  + + +    ++ I WA       +I  G V    I        TD  YPGG  FDPL   +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLA+P +   +A  T
Sbjct:   45 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLAL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYAT 239          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 8.759e-31
Identity = 84/211 (39.81%), Postives = 113/211 (53.55%), Query Frame = -1
Query:  202 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 786
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++ V+++ +G  EG R A    P     DP+            YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGEVVDPL------------YPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259          
The following BLAST results are available for this feature:
BLAST of CF835323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB23_NICPL3.932e-3138.14Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_MAIZE5.135e-3138.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ARATH5.135e-3141.38Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH5.135e-3141.38Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2A_SPIOL6.707e-3140.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2G_SOLLC8.759e-3140.59Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC8.759e-3140.59Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB22_TOBAC8.759e-3140.59Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_SOYBN8.759e-3140.89Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ORYSJ8.759e-3139.81Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835323 ID=CF835323; Name=CF835323; organism=Citrus sinensis; type=EST; length=921bp
TTTTTTTTTTTTTTTTTCCCCTGAATATTTTTTATATTCATGGCATCTAA
GTGATCACACAAGTCTTTGTACATAGATAGAGGCAATTAATACAAGTTCT
AATCATACAACCTTTCCCTAAGAGAAACACCAATTCCTTTGATCTCAAGC
TTCCACTTGGCCCAAATTTCTCTCCCTTTGTTCGTCATCATCTCACTTGG
GGGTGAAGGCAGCAAAAACGGTGGCATGACCAGGATCAGCAAGGTGAGCA
ATGAGATTGTCAATGGGGCCGGTGCCGGTGTAAATGTGCTGGAACCAAGC
ACCCATCACAGCCAACATAGCCAATCTTCCATTCTTGATCTCCTTAGTCC
TCAGCTCCTTTACCTTCTCGGGCGAACCGGATCCCCAGCCAAGTGGGTCA
AACCAAAGCCCACCTGGGTACCCAACATCGGTGCCGGTGAGCTTGTTGTT
GGGGAAGATCGGGTCAGTGTTCACACAGCCTGGCTTTATAATGTCGGCCC
ACCGTCTGCCCTCTGCCCAGCCTATGAATATCATCTCAACAATGAACAGG
GTGGTGGTGTCTGTGAAGTACTCTAGCTCCCCAGCTGTGTACCAGGATGG
AGTGTTGAGGATTCCAAGTTTTGTTAACAATTCCGGAATGAAAATTCCTG
CAGCTCCTAACATTGCCCATCTGCAGTGCACAATTTCTGATTGCACGTTC
CATCTCAGCGTCTCAGGATCAGATCCAAGACCAAGAGGATCGAAGCCGAA
GTCTCCGGGGAGGCTACCATCGAGCCATTCAGGAGGAGTGCTGCCTGGGA
ACCAGAGAGGCCTGTTAGGATCAGCTGCAGCCGCACTCACTGAAACCGAT
CGTGTTCCCGCTGTTGCTCCGTTTTTTCTCAATTTCAGCTTCTTCCCACC
AAGGAAAGAAGCCTTTGTTGC
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