CF835323

Overview
NameCF835323
Unique NameCF835323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:177..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.549e-30
Identity = 80/200 (40.00%), Postives = 108/200 (54.00%), Query Frame = -1
Query:  232 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 783
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A   +P     DP+            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q + TG GP++NL  HLADP
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--EPLGEVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADP 250          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.328e-30
Identity = 91/240 (37.92%), Postives = 125/240 (52.08%), Query Frame = -1
Query:  202 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 858
            G +SV+ S  +    P+R ++   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG               +L +      ++  ++I +G  EG R A    P    TDPI            YPGG  FDPLG  +  P+   +++ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP +   +A  T
Sbjct:   50 GRKSVAASIDSPWYGPDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG--GPLGEVTDPI------------YPGGN-FDPLGL-ADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYAT 272          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.328e-30
Identity = 81/203 (39.90%), Postives = 110/203 (54.19%), Query Frame = -1
Query:  202 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 786
            PP +L G  PGD+G+D  GL +DPET   N + E++H  WAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    I        TD  YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:    6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 200          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.328e-30
Identity = 80/203 (39.41%), Postives = 110/203 (54.19%), Query Frame = -1
Query:  202 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 786
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    I         D  YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  H+ADP +   +A  T
Sbjct:   62 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYAT 256          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.347e-30
Identity = 85/211 (40.28%), Postives = 114/211 (54.03%), Query Frame = -1
Query:  199 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAAFTP 801
            F G TP  +L+G   GD+G+D  GL SDPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    +        TD  YPGG  FDPLG  +  P+   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP   +A  +A  +P
Sbjct:   64 FSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVTDPIYPGGS-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSP 265          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.347e-30
Identity = 80/202 (39.60%), Postives = 108/202 (53.47%), Query Frame = -1
Query:  202 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 783
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    +         D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 260          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.677e-30
Identity = 80/205 (39.02%), Postives = 105/205 (51.22%), Query Frame = -1
Query:  232 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 819
            P+RP +        P +L G  PGD+G+D   + +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG   +      +     L   + I   WA       ++  G +    +       G D   PGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWA-----CQVVLMGLIEGYRVGGGTLGEGLDPLLPGGA-FDPLGL-ADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.415e-30
Identity = 78/192 (40.62%), Postives = 103/192 (53.65%), Query Frame = -1
Query:  232 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 783
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    +         D  YPGG  FDPLG     PE   EL+ K IKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGLAE-DPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.265e-29
Identity = 80/216 (37.04%), Postives = 114/216 (52.78%), Query Frame = -1
Query:  202 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 819
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G +    +         D  YPGG  FDPLG  +  PE   +++ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----CQVVLMGAIEGYRVAGGPLGEVVDPLYPGGT-FDPLGL-ADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.265e-29
Identity = 82/210 (39.05%), Postives = 112/210 (53.33%), Query Frame = -1
Query:  202 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 783
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +        +++  ++I +G  EG R A    P     DP+            YPGG  FDPLG     PE+  EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG--GPLGEIVDPL------------YPGGS-FDPLGLAE-DPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 258          
The following BLAST results are available for this feature:
BLAST of CF835323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB25_NICPL2.549e-3040.00Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB2A_PYRPY3.328e-3037.92Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_CUCSA3.328e-3039.90Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_MAIZE3.328e-3039.41Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_PHYPA4.347e-3040.28Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PETSP4.347e-3039.60Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB21_PINTH5.677e-3039.02Chlorophyll a-b binding protein type I, chloroplas... [more]
CB25_TOBAC7.415e-3040.63Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB29_MAIZE1.265e-2937.04Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_APIGR1.265e-2939.05Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835323 ID=CF835323; Name=CF835323; organism=Citrus sinensis; type=EST; length=921bp
TTTTTTTTTTTTTTTTTCCCCTGAATATTTTTTATATTCATGGCATCTAA
GTGATCACACAAGTCTTTGTACATAGATAGAGGCAATTAATACAAGTTCT
AATCATACAACCTTTCCCTAAGAGAAACACCAATTCCTTTGATCTCAAGC
TTCCACTTGGCCCAAATTTCTCTCCCTTTGTTCGTCATCATCTCACTTGG
GGGTGAAGGCAGCAAAAACGGTGGCATGACCAGGATCAGCAAGGTGAGCA
ATGAGATTGTCAATGGGGCCGGTGCCGGTGTAAATGTGCTGGAACCAAGC
ACCCATCACAGCCAACATAGCCAATCTTCCATTCTTGATCTCCTTAGTCC
TCAGCTCCTTTACCTTCTCGGGCGAACCGGATCCCCAGCCAAGTGGGTCA
AACCAAAGCCCACCTGGGTACCCAACATCGGTGCCGGTGAGCTTGTTGTT
GGGGAAGATCGGGTCAGTGTTCACACAGCCTGGCTTTATAATGTCGGCCC
ACCGTCTGCCCTCTGCCCAGCCTATGAATATCATCTCAACAATGAACAGG
GTGGTGGTGTCTGTGAAGTACTCTAGCTCCCCAGCTGTGTACCAGGATGG
AGTGTTGAGGATTCCAAGTTTTGTTAACAATTCCGGAATGAAAATTCCTG
CAGCTCCTAACATTGCCCATCTGCAGTGCACAATTTCTGATTGCACGTTC
CATCTCAGCGTCTCAGGATCAGATCCAAGACCAAGAGGATCGAAGCCGAA
GTCTCCGGGGAGGCTACCATCGAGCCATTCAGGAGGAGTGCTGCCTGGGA
ACCAGAGAGGCCTGTTAGGATCAGCTGCAGCCGCACTCACTGAAACCGAT
CGTGTTCCCGCTGTTGCTCCGTTTTTTCTCAATTTCAGCTTCTTCCCACC
AAGGAAAGAAGCCTTTGTTGC
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