CF835323

Overview
NameCF835323
Unique NameCF835323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:177..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.826e-28
Identity = 93/248 (37.50%), Postives = 127/248 (51.21%), Query Frame = -1
Query:  199 TAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA---FTP 864
            T   R  +V  AA +   P+R  +   F  +  PE+L G  PGD+G+D  GL +DP+T     + E++H RWA+LGA GI  PELL++  G+    P W+ AG        L Y  + + +          V+++ +G AE  R A+    G            L   D  YPGG  FDPLG  +  P+   EL+ KEIKNGRLAM + +G + Q I TG GP+ NL  HLADP     FA+   FTP
Sbjct:   18 TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-ANGGSEGF-----------LDDLDTLYPGGP-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTP 251          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.826e-28
Identity = 78/192 (40.62%), Postives = 103/192 (53.65%), Query Frame = -1
Query:  232 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 783
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I         D  YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G +   I TG GP++NL  HLADP
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGLAE-VPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADP 212          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.115e-28
Identity = 78/204 (38.24%), Postives = 106/204 (51.96%), Query Frame = -1
Query:  202 TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 789
            +PP +L G  PGD+G+D  GL +DPET   N + E++HCRWA+    G   PELL + G+      W+ AG  + F++         +L   + I   WA       ++  G V    +         D  Y GG  FDPLG G   PE+  EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HL DP +   +A  T
Sbjct:   63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGS-QIFSEGGLSHPGNPSLVHAQSILAIWA-----CQVVLMGAVEGYHVAGGRLGEVVDPLYLGGS-FDPLGLGD-DPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYAT 258          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.115e-28
Identity = 84/218 (38.53%), Postives = 111/218 (50.92%), Query Frame = -1
Query:  199 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 783
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K +G+    P W+ AG        L+Y  +   +           +++ +G  EG                 F  N L G   G   YPGG +FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HL DP   +A VFA  F P
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEG-----------------FRINGLDGVGEGNDLYPGGQYFDPLGL-ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAP 266          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.115e-28
Identity = 84/229 (36.68%), Postives = 115/229 (50.22%), Query Frame = -1
Query:  202 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSW-------YTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 864
            TA T+ V       D  + L       P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W       ++ G L+Y  + + +    ++ I WA       ++  G V    +         D  YPGG  FDPLG    + E   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   38 TAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGLADDA-EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 258          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.069e-28
Identity = 79/209 (37.80%), Postives = 111/209 (53.11%), Query Frame = -1
Query:  289 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-------LTGTDVGYPGGLWFDPL--------GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 840
            V+AAA  P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   +L   +++ +GW E +RW D       + D   P +K        TG + GYPGG +FDPL        G      EK++ L+  EIK+ RLAMLA++  +F+
Sbjct:   44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTG-EQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFE 243          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.314e-28
Identity = 88/229 (38.43%), Postives = 114/229 (49.78%), Query Frame = -1
Query:  199 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLF--------IVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTP 819
            PNR  W   +  +  P +L G  PGD+G+D  GL +DPET +   + E++H RWAMLGA G   PELL K G       W+ AG        L+Y  + + +          V++I +G  EG R         VN  P        G D  YPG   FDPLG  +  P+   EL+ KEIKNGRLA  ++ G + Q I TG GP+ NL  HLA+P     FA    FTP
Sbjct:   39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR---------VNGGPAG-----EGLDPLYPGES-FDPLGL-ADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.184e-27
Identity = 88/274 (32.12%), Postives = 122/274 (44.53%), Query Frame = -1
Query:  202 GTRSVSVSAA-AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQS-------------------------------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTT-----------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 858
            GT+  S   A     +RPLWFPG+  PE+LDGSL GD+GFDP GLG   E L++++ S                                           E++H RWAML   G    E LT +      +W  AG++E    ++           TL  +E++ IG+ E +R                 N +L      YPGG +FDPLG  S  P K  +L+  EIK+ RLAM+  +G   Q   TG GP++N   HL+DP H T+   F+
Sbjct:   36 GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGKFFDPLGLAS-DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.637e-27
Identity = 81/218 (37.16%), Postives = 111/218 (50.92%), Query Frame = -1
Query:  199 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 783
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K   ++   P W+ AG        L+Y  +   +           +++ +G  EG                 F  N L G   G   YPGG +FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL+ HL +P   +A V+A  F P
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG-----------------FRINGLPGVGEGNDLYPGGQYFDPLGL-ADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVP 263          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.499e-25
Identity = 89/252 (35.32%), Postives = 122/252 (48.41%), Query Frame = -1
Query:  196 GTRSVSVSAAAADPNRPLWFPGSTP--------PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT-----KLGILNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA---AFTPK 858
            G ++VS S+++A+     + P +T         P    G  PGD+G+D  GL +DPET +   + E++H R  +LGA G+  PELL      K G  +   W+ AG        L Y  + + +          V+++ +G  EG R         VN  P        G D  YPG   FDPLG     P+   EL+ KEIKNGRLAM A +G + Q I TG GPI+NL  HLA+P     FA    FTP+
Sbjct:   43 GAKAVSKSSSSANQ---FYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFG--DAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR---------VNGGPAGE-----GLDPLYPGEA-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTPQ 273          
The following BLAST results are available for this feature:
BLAST of CF835323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2_DUNTE1.826e-2837.50Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA1.826e-2840.63Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB48_MAIZE3.115e-2838.24Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB23_HORVU3.115e-2838.53Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_HORVU3.115e-2836.68Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB4B_SOLLC4.069e-2837.80Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB2_CHLRE5.314e-2838.43Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB4B_ARATH1.184e-2732.12Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB23_SOLLC2.637e-2737.16Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNSA5.499e-2535.32Chlorophyll a-b binding protein of LHCII type I, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01A19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835323 ID=CF835323; Name=CF835323; organism=Citrus sinensis; type=EST; length=921bp
TTTTTTTTTTTTTTTTTCCCCTGAATATTTTTTATATTCATGGCATCTAA
GTGATCACACAAGTCTTTGTACATAGATAGAGGCAATTAATACAAGTTCT
AATCATACAACCTTTCCCTAAGAGAAACACCAATTCCTTTGATCTCAAGC
TTCCACTTGGCCCAAATTTCTCTCCCTTTGTTCGTCATCATCTCACTTGG
GGGTGAAGGCAGCAAAAACGGTGGCATGACCAGGATCAGCAAGGTGAGCA
ATGAGATTGTCAATGGGGCCGGTGCCGGTGTAAATGTGCTGGAACCAAGC
ACCCATCACAGCCAACATAGCCAATCTTCCATTCTTGATCTCCTTAGTCC
TCAGCTCCTTTACCTTCTCGGGCGAACCGGATCCCCAGCCAAGTGGGTCA
AACCAAAGCCCACCTGGGTACCCAACATCGGTGCCGGTGAGCTTGTTGTT
GGGGAAGATCGGGTCAGTGTTCACACAGCCTGGCTTTATAATGTCGGCCC
ACCGTCTGCCCTCTGCCCAGCCTATGAATATCATCTCAACAATGAACAGG
GTGGTGGTGTCTGTGAAGTACTCTAGCTCCCCAGCTGTGTACCAGGATGG
AGTGTTGAGGATTCCAAGTTTTGTTAACAATTCCGGAATGAAAATTCCTG
CAGCTCCTAACATTGCCCATCTGCAGTGCACAATTTCTGATTGCACGTTC
CATCTCAGCGTCTCAGGATCAGATCCAAGACCAAGAGGATCGAAGCCGAA
GTCTCCGGGGAGGCTACCATCGAGCCATTCAGGAGGAGTGCTGCCTGGGA
ACCAGAGAGGCCTGTTAGGATCAGCTGCAGCCGCACTCACTGAAACCGAT
CGTGTTCCCGCTGTTGCTCCGTTTTTTCTCAATTTCAGCTTCTTCCCACC
AAGGAAAGAAGCCTTTGTTGC
back to top