CF835323

Overview
NameCF835323
Unique NameCF835323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:177..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.600e-24
Identity = 74/185 (40.00%), Postives = 98/185 (52.97%), Query Frame = -1
Query:  202 GLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 732
            GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I        TD  YPGG  FDPLG     PE + EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 250          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.147e-22
Identity = 77/244 (31.56%), Postives = 109/244 (44.67%), Query Frame = -1
Query:  253 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNV-------------------------------------------QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 822
            D +R +WFPG+ PPEWLDGS+ GD GFDP GLG   E L+++                                            + E++H RWAMLG  G    E LT +      +W  AG++E    +           TTL  +E++ +G+ E +R                 N++L      YPGG +FDPLG  +  PEK+  L+  EIK+ RLAM+A +    Q  +TG GP+  L
Sbjct:   53 DGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQR-----------------NSELDPEKRIYPGG-YFDPLGLAA-DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 71/198 (35.86%), Postives = 91/198 (45.96%), Query Frame = -1
Query:  217 LWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 807
            +WFPG+ PP  L G  P D GFDPL + +DP        SE+ H R +ML   G  +PELL K       +W+  G      D   L  + M      E  R       G  N D         GT D  YPG   FDPL       +   +   +EIKNGRLAM  ++G  FQ++ TG  P+ NL AH A+P  A +
Sbjct:  161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVGNS---VDGIKLGFILMAIAAPTEYWRGN-----GGFNWDK--------GTADRSYPG---FDPL-------KLTTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANPVGANI 326          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.111e-17
Identity = 69/195 (35.38%), Postives = 93/195 (47.69%), Query Frame = -1
Query:  232 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 816
            + PLWFP +  P WL+G   GD GFDP GL +DP+T      +E+ H R AML   G  +P+ L K GI     WY A +         + + E+     A G    ++ +    N+DP         T + YPG   FDPL     + +  KE    EIKNGRLA+ A++G   Q    G  P+ NL  HL  P
Sbjct:    1 SHPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQ------NAGIGLKEVAIFTAAYGV--FEVARGVKENSDP---------TTI-YPG---FDPLNL---TTDYTKEA---EIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQP 162          

HSP 2 Score: 90.8929 bits (224), Expect = 1.111e-17
Identity = 68/206 (33.01%), Postives = 88/206 (42.72%), Query Frame = -1
Query:  250 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 867
            A   T     +++ A   R LWFP   PP +L G   GD GFDP GL +DP T      +E+ HCR +ML   G  +PEL      L   +W+   +   F     + +  +  + +  G                 F  N     D  YPG   FDPL     + E  KE    EIKNGRLAM  + G   Q   TG  PI+NLI
Sbjct:  353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPEL------LGNGAWFQIWDKVDFNRFAVVALQVVAPLEYWRGNGG--------------FLWNDEETVDQSYPG---FDPLNL---TTEYTKE---AEIKNGRLAMNGMFGLEVQSHVTGKSPINNLI 529          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.111e-17
Identity = 65/197 (32.99%), Postives = 95/197 (48.22%), Query Frame = -1
Query:  241 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 783
            P +L G  PGD+G+D  GL + PET   N + E++H R AM  A G   PELL+ +G       W+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDP++P +              FD LG    + E   EL+ KE+KNGRLAM ++ G + Q I +    ++NL  HL
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIAR--GPLGEVTDPLYPGS--------------FDSLGLAEDT-EAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 7.199e-17
Identity = 56/154 (36.36%), Postives = 75/154 (48.70%), Query Frame = -1
Query:  388 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 819
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G V    +       G D  YPGG  FDPLG
Sbjct:   51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAI-WA-----CQVVLMGAVEGYRVGGGPLGEGLDQLYPGGA-FDPLG 197          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.339e-12
Identity = 53/142 (37.32%), Postives = 69/142 (48.59%), Query Frame = -1
Query:  232 ELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 633
            ELL K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G +    +       G D  YPG   FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQVVLMGLIEGYRVGGGPLGEGLDPLYPGDA-FDPLGLAD-DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 134          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = -1
Query:  202 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 420
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 259          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = -1
Query:  202 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 420
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 259          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.553e-11
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = -1
Query:  202 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 420
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H+ADP +   +A  T
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFAT 261          
The following BLAST results are available for this feature:
BLAST of CF835323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB22_SOYBN1.600e-2440.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB4C_ARATH1.147e-2231.56Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
LH15_EUGGR1.187e-1935.86Light-harvesting complex I LH35 proteins (Fragment... [more]
LH18_EUGGR1.111e-1735.38Light-harvesting complex I LH38 proteins (Fragment... [more]
CB2_MALDO1.111e-1732.99Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_SILPR7.199e-1736.36Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_PINSY5.339e-1237.32Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB2C_SOLLC9.106e-1253.42Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC9.106e-1253.42Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC1.553e-1152.05Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835323 ID=CF835323; Name=CF835323; organism=Citrus sinensis; type=EST; length=921bp
TTTTTTTTTTTTTTTTTCCCCTGAATATTTTTTATATTCATGGCATCTAA
GTGATCACACAAGTCTTTGTACATAGATAGAGGCAATTAATACAAGTTCT
AATCATACAACCTTTCCCTAAGAGAAACACCAATTCCTTTGATCTCAAGC
TTCCACTTGGCCCAAATTTCTCTCCCTTTGTTCGTCATCATCTCACTTGG
GGGTGAAGGCAGCAAAAACGGTGGCATGACCAGGATCAGCAAGGTGAGCA
ATGAGATTGTCAATGGGGCCGGTGCCGGTGTAAATGTGCTGGAACCAAGC
ACCCATCACAGCCAACATAGCCAATCTTCCATTCTTGATCTCCTTAGTCC
TCAGCTCCTTTACCTTCTCGGGCGAACCGGATCCCCAGCCAAGTGGGTCA
AACCAAAGCCCACCTGGGTACCCAACATCGGTGCCGGTGAGCTTGTTGTT
GGGGAAGATCGGGTCAGTGTTCACACAGCCTGGCTTTATAATGTCGGCCC
ACCGTCTGCCCTCTGCCCAGCCTATGAATATCATCTCAACAATGAACAGG
GTGGTGGTGTCTGTGAAGTACTCTAGCTCCCCAGCTGTGTACCAGGATGG
AGTGTTGAGGATTCCAAGTTTTGTTAACAATTCCGGAATGAAAATTCCTG
CAGCTCCTAACATTGCCCATCTGCAGTGCACAATTTCTGATTGCACGTTC
CATCTCAGCGTCTCAGGATCAGATCCAAGACCAAGAGGATCGAAGCCGAA
GTCTCCGGGGAGGCTACCATCGAGCCATTCAGGAGGAGTGCTGCCTGGGA
ACCAGAGAGGCCTGTTAGGATCAGCTGCAGCCGCACTCACTGAAACCGAT
CGTGTTCCCGCTGTTGCTCCGTTTTTTCTCAATTTCAGCTTCTTCCCACC
AAGGAAAGAAGCCTTTGTTGC
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