CF835324
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 5.450e-32 Identity = 82/194 (42.27%), Postives = 108/194 (55.67%), Query Frame = 1 Query: 301 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 PP +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + + ++ I WA +I G V + L D+ YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRVAGEGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 7.118e-32 Identity = 80/192 (41.67%), Postives = 107/192 (55.73%), Query Frame = 1 Query: 304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + + ++ I WA ++ G + + TD YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG GP+DNL+ HLADP Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAIEGYRVAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADP 251
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 9.297e-32 Identity = 81/192 (42.19%), Postives = 107/192 (55.73%), Query Frame = 1 Query: 304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG L+Y + + ++ I WA A ++ G V + G D YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL H+ADP Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADP 249
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.214e-31 Identity = 85/206 (41.26%), Postives = 113/206 (54.85%), Query Frame = 1 Query: 268 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P+RP + P S P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG L+Y + + ++ I WA ++ G V + G D YPGG FDPLG + P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLADP Sbjct: 52 PDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQVVLMGFVEGYRVGGGPLGEGLDPIYPGGA-FDPLGL-ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.586e-31 Identity = 78/191 (40.84%), Postives = 104/191 (54.45%), Query Frame = 1 Query: 304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG + + L + I WA + ++ G + + G D YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL H+ADP Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWA-----SQVVLMGLIEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 2.071e-31 Identity = 80/192 (41.67%), Postives = 107/192 (55.73%), Query Frame = 1 Query: 304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG L+Y + + ++ I WA + ++ G V + G D YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL H+ADP Sbjct: 38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----SQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADP 221
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.705e-31 Identity = 87/206 (42.23%), Postives = 113/206 (54.85%), Query Frame = 1 Query: 271 NRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 +RPL+ F GS PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL K G+ W+ AG L+Y + + + ++ I WA +I G V + D YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL HLADP Sbjct: 53 DRPLYLGPFSGS-PPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVEGYRVAGGPLGEVEDPIYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31 Identity = 87/219 (39.73%), Postives = 119/219 (54.34%), Query Frame = 1 Query: 232 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 ++SVS + P+R + F G PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL++ G+ W+ AG L+Y + + + ++ I WA ++ G V I TD YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 30 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 239
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 6.026e-31 Identity = 90/223 (40.36%), Postives = 120/223 (53.81%), Query Frame = 1 Query: 223 TAGT-RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 TAG ++V S+ P+R + F G +P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + + ++ I WA +I G V I D YPGG FDPLG + PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 38 TAGKPKTVQSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 6.026e-31 Identity = 92/230 (40.00%), Postives = 121/230 (52.61%), Query Frame = 1 Query: 229 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 G +SV+ S + P+R L+ F G PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+ W+ AG +L + ++ ++I +G EG R A P TDPI YPGG FDPLG + P+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HLADP Sbjct: 50 GKKSVAASIDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG--GPLGEVTDPI------------YPGGN-FDPLGL-ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 262 The following BLAST results are available for this feature:
BLAST of CF835324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835324 ID=CF835324; Name=CF835324; organism=Citrus sinensis; type=EST; length=860bpback to top |