CF835324

Overview
NameCF835324
Unique NameCF835324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:12..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.656e-28
Identity = 79/209 (37.80%), Postives = 111/209 (53.11%), Query Frame = 1
Query:  247 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-------LTGTDVGYPGGLWFDPL--------GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 798
            V+AAA  P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   +L   +++ +GW E +RW D       + D   P +K        TG + GYPGG +FDPL        G      EK++ L+  EIK+ RLAMLA++  +F+
Sbjct:   44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTG-EQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFE 243          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.775e-28
Identity = 76/194 (39.18%), Postives = 102/194 (52.58%), Query Frame = 1
Query:  298 TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            +PP +L G  PGD+G+D  GL +DPET   N + E++HCRWA+    G   PELL + G+      W+ AG  + F++         +L   + I   WA       ++  G V    +         D  Y GG  FDPLG G   PE+  EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HL DP
Sbjct:   63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGS-QIFSEGGLSHPGNPSLVHAQSILAIWA-----CQVVLMGAVEGYHVAGGRLGEVVDPLYLGGS-FDPLGLGD-DPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDP 248          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.775e-28
Identity = 82/219 (37.44%), Postives = 111/219 (50.68%), Query Frame = 1
Query:  223 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSW-------YTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            TA T+ V       D  + L       P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W       ++ G L+Y  + + +    ++ I WA       ++  G V    +         D  YPGG  FDPLG    + E   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   38 TAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGLADDA-EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.064e-27
Identity = 88/234 (37.61%), Postives = 121/234 (51.71%), Query Frame = 1
Query:  223 TAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            T   R  +V  AA +   P+R  +   F  +  PE+L G  PGD+G+D  GL +DP+T     + E++H RWA+LGA GI  PELL++  G+    P W+ AG        L Y  + + +          V+++ +G AE  R A+    G            L   D  YPGG  FDPLG  +  P+   EL+ KEIKNGRLAM + +G + Q I TG GP+ NL  HLADP
Sbjct:   18 TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-ANGGSEGF-----------LDDLDTLYPGGP-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.064e-27
Identity = 78/204 (38.24%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K +G+    P W+ AG        L+Y  +   +           +++ +G  EG                 F  N L G   G   YPGG +FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HL DP
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEG-----------------FRINGLDGVGEGNDLYPGGQYFDPLGL-ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDP 252          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.370e-27
Identity = 83/215 (38.60%), Postives = 109/215 (50.70%), Query Frame = 1
Query:  268 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLF--------IVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            PNR  W   +  +  P +L G  PGD+G+D  GL +DPET +   + E++H RWAMLGA G   PELL K G       W+ AG        L+Y  + + +          V++I +G  EG R         VN  P        G D  YPG   FDPLG  +  P+   EL+ KEIKNGRLA  ++ G + Q I TG GP+ NL  HLA+P
Sbjct:   39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR---------VNGGPAG-----EGLDPLYPGES-FDPLGL-ADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.042e-27
Identity = 81/249 (32.53%), Postives = 114/249 (45.78%), Query Frame = 1
Query:  271 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQS-------------------------------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTT-----------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            +RPLW+PG+  P+WLDGSL GD+GFDP GLG   E L++++ S                                           E++H RWAML   G    E LT +      +W  AG++E    ++           TL  +E++ IG+ E +R                 N +L      YPGG +FDPLG  +  PEK  +L+  EIK+ RLAM+A +G   Q   TG GP++N   HL+DP
Sbjct:   54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGKFFDPLGLAA-DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 278          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.042e-27
Identity = 76/204 (37.25%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K   ++   P W+ AG        L+Y  +   +           +++ +G  EG                 F  N L G   G   YPGG +FDPLG  +  P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL+ HL +P
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG-----------------FRINGLPGVGEGNDLYPGGQYFDPLGL-ADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNP 249          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.956e-26
Identity = 85/264 (32.20%), Postives = 117/264 (44.32%), Query Frame = 1
Query:  229 GTRSVSVSAA-AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQS-------------------------------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTT-----------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            GT+  S   A     +RPLWFPG+  PE+LDGSL GD+GFDP GLG   E L++++ S                                           E++H RWAML   G    E LT +      +W  AG++E    ++           TL  +E++ IG+ E +R                 N +L      YPGG +FDPLG  S  P K  +L+  EIK+ RLAM+  +G   Q   TG GP++N   HL+DP
Sbjct:   36 GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGKFFDPLGLAS-DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDP 275          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.452e-24
Identity = 72/175 (41.14%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  355 GLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I        TD  YPGG  FDPLG     PE + EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 240          
The following BLAST results are available for this feature:
BLAST of CF835324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4B_SOLLC3.656e-2837.80Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB48_MAIZE4.775e-2839.18Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_HORVU4.775e-2837.44Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_DUNTE1.064e-2737.61Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU1.064e-2738.24Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLRE2.370e-2738.60Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB4A_ARATH4.042e-2732.53Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB23_SOLLC4.042e-2737.25Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB4B_ARATH9.956e-2632.20Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB22_SOYBN2.452e-2441.14Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835324 ID=CF835324; Name=CF835324; organism=Citrus sinensis; type=EST; length=860bp
CTTCTGTTCACTGCCTATTGTATTCTACTTTACACGCACACAAACGCCAG
TCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTT
GTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGT
AGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCT
GAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGA
GTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACT
CCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCC
TCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAG
AAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATT
CCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACAC
AGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTG
AGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATA
AAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCAC
CGGCACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTGACCCACTTGGCT
GGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGGACTAAGGAGATC
AAGAATGGAAGATTGGCTATGTTGGCTGTGATGGGTGCTTGGTTCCAGCA
CATTTACACCGGCACCGGCCCCATTGACAATCTCATTGCTCACCTTGCTG
ATCCTGGTCA
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