CF835324

Overview
NameCF835324
Unique NameCF835324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:12..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  667 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H+ADP
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 251          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  667 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  H+ADP
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 251          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.304e-11
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  658 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            D+ YPGG  FDPL      PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   45 DLLYPGGS-FDPLA-SLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 108          
The following BLAST results are available for this feature:
BLAST of CF835324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2F_SOLLC2.381e-1157.14Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.381e-1157.14Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA5.304e-1156.06Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835324 ID=CF835324; Name=CF835324; organism=Citrus sinensis; type=EST; length=860bp
CTTCTGTTCACTGCCTATTGTATTCTACTTTACACGCACACAAACGCCAG
TCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTT
GTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGT
AGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCT
GAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGA
GTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACT
CCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCC
TCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAG
AAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATT
CCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACAC
AGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTG
AGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATA
AAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCAC
CGGCACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTGACCCACTTGGCT
GGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGGACTAAGGAGATC
AAGAATGGAAGATTGGCTATGTTGGCTGTGATGGGTGCTTGGTTCCAGCA
CATTTACACCGGCACCGGCCCCATTGACAATCTCATTGCTCACCTTGCTG
ATCCTGGTCA
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