CF835329

Overview
NameCF835329
Unique NameCF835329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.798e-28
Identity = 74/181 (40.88%), Postives = 111/181 (61.33%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS-SSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEEN---ERLRQQVAEVSNA 730
            M R  +Q+++I+N   RQVTFSKRR G+ KKA E+SVLCDADVALI+FS  GKL+E+SS SSM+ ILE+++ +S +   V +P+ E Q    + Y +L  +        RQ+ GE++  L+++ELQ+LE  LE  L  +            +ELQ++ K L  +N   ++L +   E +NA
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNA 181          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.798e-28
Identity = 74/181 (40.88%), Postives = 111/181 (61.33%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS-SSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEEN---ERLRQQVAEVSNA 730
            M R  +Q+++I+N   RQVTFSKRR G+ KKA E+SVLCDADVALI+FS  GKL+E+SS SSM+ ILE+++ +S +   V +P+ E Q    + Y +L  +        RQ+ GE++  L+++ELQ+LE  LE  L  +            +ELQ++ K L  +N   ++L +   E +NA
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNA 181          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 68/170 (40.00%), Postives = 102/170 (60.00%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQ 709
            M R KI IK+IDN   RQVTFSKRR G+ KKA EL++LCDADV LI+FS TG+L+++SSSSMK I+E+++   +   R+  P  E +  +    + L ++     H  RQ+ GEEI   ++ +LQ L+  +E+ L  +             +L  +G L+ +EN  LR++
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQ-REVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKK 169          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 66/156 (42.31%), Postives = 99/156 (63.46%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRR 667
            M R KI+IK+IDNAT+RQVTFSKRR G+FKKA ELS+LCDA+V L++FS+T +L++++SSSMK I+E++    ++  +    S E +L +    S L ++        RQ+ G+++ GL +E+LQ LE  LE+ L  +             EL R+
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMNASSEAKLWQQEAAS-LRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 72/174 (41.38%), Postives = 106/174 (60.92%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R K+Q+K+I+N   RQVTFSKRR G+ KKA E+SVLCDA+VALIIFS  GKL+EY++ S M +ILE++  +S   + +     + Q    + Y  L  +        + + GE++  L+L+ELQ+LE+ LE  L  +            NELQR+ K L EEN+ L++++ E
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVE 174          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.813e-27
Identity = 69/172 (40.12%), Postives = 111/172 (64.53%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNY--SMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQ 709
            M R K Q+K+I+NAT+RQVTFSKRR G+ KKA ELSVLCDA+V+LIIFS  GKL+E++SS+M++ ++++  H+K  +RV    V  + +++  Y  + + K+  +     R++ GE I   S+EELQ++E+ LE  +  +             +L+++ K L  ENE+L ++
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTK--DRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEK 170          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.813e-27
Identity = 71/174 (40.80%), Postives = 106/174 (60.92%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R K+Q+K+I+N   RQVTFSKRR G+ KKA E+SVLCDA+VALIIFS  GKL++Y++ S M +ILE++  +S   + +     + Q    + Y  L  +        + + GE++  L+L+ELQ+LE+ LE  L  +            NELQR+ K L EEN+ L++++ E
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVE 174          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-27
Identity = 68/176 (38.64%), Postives = 112/176 (63.64%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFK-EAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVS 724
            M R KI I++IDN+T+RQVTFSKRR G+ KKA+ELS+LCDA+V L++FS+TG+L+E+SS++MK +++++    + L   +  S E+++ +    S+  +    ++SH  +Q+ GEE+ GL + +LQ LE  LE+ L  +             EL  +G L+ +EN  L + +  +S
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEELLGGNATS-EIKIWQREAASLRQQLHNLQESH--KQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSLNVMS 173          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-27
Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEV 721
            M R KI I+KID++T+RQVTFSKRR+G+ KKA+EL++LCDA+V LIIFS T KL++++SSS+K  +E+        + +  P+ E++  +      L +E        RQ+ G E++GLS++ELQ +E  LE+ L  +             EL R+  L+  EN  L ++V  +
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERFNTAKMEEQELMNPASEVKFWQ-REAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRI 173          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.040e-27
Identity = 72/175 (41.14%), Postives = 109/175 (62.29%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVH-SKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEV 721
            M R KI+IK+I+NA +RQVTFSKRR G+ KKA ELSVLCDA+VA+I+FS +GKLFEYSS+ MK+ L ++  H S +  + ++   E+ +L++    +      ++ HL  Q++G+ ++ L+ +ELQ LE+ L   L  V             E + + +    ENE LR+QV E+
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQLSKL------QEKHL--QLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKEQRAELENETLRRQVQEL 167          
The following BLAST results are available for this feature:
BLAST of CF835329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
MAD18_ORYSJ2.798e-2840.88MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI2.798e-2840.88MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD25_ORYSJ6.233e-2840.00MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MAD23_ORYSJ8.140e-2842.31MADS-box transcription factor 23 OS=Oryza sativa s... [more]
MAD14_ORYSJ8.140e-2841.38MADS-box transcription factor 14 OS=Oryza sativa s... [more]
SOC1_ARATH1.813e-2740.12MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD14_ORYSI1.813e-2740.80MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD57_ORYSJ2.368e-2738.64MADS-box transcription factor 57 OS=Oryza sativa s... [more]
AGL17_ARATH2.368e-2739.08Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
AGL15_ARATH4.040e-2741.14Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835329 ID=CF835329; Name=CF835329; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTCCTTTTTTTAATCTCTTTTCCTTCTCCCATATTCTCTCGT
CTCTCTCTATCGCTCATTGGTGGCATTTTCAAAGTCTCCATTCCGAAGTT
TTAAACTCTCCCACAAAACCAAACCACATTACCAGCCGATCTCCATAAGC
CAAATTGGGAAGATCACAGCAGTAACAGCTAGCAAGCAAGGGCAAAGAGA
TGGCGAGAGAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGG
CAAGTCACTTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGA
GCTTTCTGTTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCA
CAGGCAAGCTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAA
AAGCACCGTGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGT
TGAGTTGCAGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAG
CTGCTGAAAAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCAT
GGATTAAGTTTAGAAGAATTGCAGAAGCTTGAAAGGTCTCTTGAAGTTGG
ATTGGGACGAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTA
ATGAACTCCAAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTA
AGACAGCAAGTGGCGGAGGTATCAAATGCATA
back to top