CF835329

Overview
NameCF835329
Unique NameCF835329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 70/177 (39.55%), Postives = 108/177 (61.02%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVD-QPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVS 724
            M R K+++K+I+N  +RQVTF+KRR G+ KKA ELSVLCDA+VALIIFS  G+LFE+S+SS M + LE++R  + NL   +   ++E +L     Y  L           R + GE++  LSL+EL++LE  +E+ L  +             EL+R+ + L + N+ L++++ E S
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETS 177          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 70/177 (39.55%), Postives = 108/177 (61.02%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVD-QPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVS 724
            M R K+++K+I+N  +RQVTF+KRR G+ KKA ELSVLCDA+VALIIFS  G+LFE+S+SS M + LE++R  + NL   +   ++E +L     Y  L           R + GE++  LSL+EL++LE  +E+ L  +             EL+R+ + L + N+ L++++ E S
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETS 177          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.005e-26
Identity = 72/176 (40.91%), Postives = 105/176 (59.66%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYS--SSSMKEILEKH-RVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R KI+IK+I+N T RQVTFSKRR G+ KKA ELSVLCDA++ LIIFS++GKLFEYS  SSSMK+I+E++ +V    +   D   +  ++    N      E  +    +R+M GE++  L++ EL  L + LE    RV              L+R+ ++L ++N  L + +AE
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKN------ENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAE 170          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 70/176 (39.77%), Postives = 108/176 (61.36%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFK--EAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R K+Q+K+I+N   RQVTFSKRR G+ KKA E+SVLCDA+VA I+FS  GKL+EY++ S M +ILE++  +S   + +     E +    + Y  L    E  +K H  + + GE++  L+L+ELQ+LE+ LE  L  +            +ELQ++ + L EEN+ L++++ E
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCH--KHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVE 174          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.467e-26
Identity = 66/182 (36.26%), Postives = 102/182 (56.04%), Query Frame = 2
Query:  185 SKGKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730
            S  +++ R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VALI+FS+ G+L+EY+++S+K  +E+++    +       S           S L  +     +  R M GE +  LSL +L+ LE+ +E G+ ++              +Q+R   L   N+ LR ++AE   A
Sbjct:   12 SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERA 193          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.467e-26
Identity = 65/182 (35.71%), Postives = 102/182 (56.04%), Query Frame = 2
Query:  185 SKGKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730
            S  +++ R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VAL++FS  G+L+EY+++S+K  +E+++    +       S           S L  +     +  R M GE + G+ L+EL+ LE+ +E G+ ++              +Q+R   L   N+ LR ++AE   A
Sbjct:   12 SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERA 193          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.619e-26
Identity = 67/183 (36.61%), Postives = 108/183 (59.02%), Query Frame = 2
Query:  176 QLASKGKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLE--NNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            ++A   K++ R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VAL+IFS  G+L+EY+++S++  +E+++      + V+ P++     +      S L ++  +  +L R + GE +  L+ +EL+ LE  LE G+ RV              +Q+R   L  +N  LR ++ E
Sbjct:    8 EVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACS--DAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITE 188          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 70/177 (39.55%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHRVHSKNLERVDQPSVE---LQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R ++++K+I+N   RQVTF+KRR G+ KKA ELSVLCDA+VALIIFS  GKL+E+ SSSSM   LE+++  +      + PS E   ++L     Y  L +         R + GE++  LS +EL+ LER L+  L ++            N+LQ + ++L E N+ LR ++A+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLAD 177          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.697e-25
Identity = 69/181 (38.12%), Postives = 105/181 (58.01%), Query Frame = 2
Query:  182 ASKGKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLE--NNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            A   K++ R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VAL+IFS  G+L+EY+++S++  +E+++      + V+ PSV     +      S L ++  +  +  R + GE +  L+ +EL+ LE  LE G+ RV              +Q+R   L   N  LR ++AE
Sbjct:   10 AESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACS--DAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAE 188          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.697e-25
Identity = 79/182 (43.41%), Postives = 111/182 (60.99%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKH-------RVHSKNLERVDQPS-VELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEV 721
            M R KI+IK+I+NA +RQVTFSKRR G+ KKA ELSVLCDA+VA+I+FS +GKLFE+SS+SMK+ L ++        V   N +  +Q    E+ LL+ +  SML     ++ HL   M+G+ ++ LSL+ELQ LE+ L   L  V             E + + +    ENE LR+QV E+
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLK-DEISML-----QEKHL--HMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQEL 174          
The following BLAST results are available for this feature:
BLAST of CF835329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
MADS5_ORYSJ9.000e-2739.55MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI9.000e-2739.55MADS-box transcription factor 5 OS=Oryza sativa su... [more]
GGM13_GNEGN2.005e-2640.91MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
MAD15_ORYSJ2.619e-2639.77MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AG_TOBAC4.467e-2636.26Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC4.467e-2635.71Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AGL5_ARATH7.619e-2636.61Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
SEP3_ARATH9.951e-2639.55Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL1_ARATH1.697e-2538.12Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AGL15_BRANA1.697e-2543.41Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835329 ID=CF835329; Name=CF835329; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTCCTTTTTTTAATCTCTTTTCCTTCTCCCATATTCTCTCGT
CTCTCTCTATCGCTCATTGGTGGCATTTTCAAAGTCTCCATTCCGAAGTT
TTAAACTCTCCCACAAAACCAAACCACATTACCAGCCGATCTCCATAAGC
CAAATTGGGAAGATCACAGCAGTAACAGCTAGCAAGCAAGGGCAAAGAGA
TGGCGAGAGAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGG
CAAGTCACTTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGA
GCTTTCTGTTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCA
CAGGCAAGCTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAA
AAGCACCGTGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGT
TGAGTTGCAGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAG
CTGCTGAAAAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCAT
GGATTAAGTTTAGAAGAATTGCAGAAGCTTGAAAGGTCTCTTGAAGTTGG
ATTGGGACGAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTA
ATGAACTCCAAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTA
AGACAGCAAGTGGCGGAGGTATCAAATGCATA
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