CF835329

Overview
NameCF835329
Unique NameCF835329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 69/185 (37.30%), Postives = 106/185 (57.30%), Query Frame = 2
Query:  185 SKGKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHR---VHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730
            S  +++ R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VALI+FS  G+L+EY+++S+K  +E+++     S N   V + + +    E    S L +E +      R M GE +  L++ +L+ LE  LE G+ R+              +Q++   L   N+ LR ++AE   A
Sbjct:   12 SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQE---ASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERA 193          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 72/177 (40.68%), Postives = 104/177 (58.76%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVH---SKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R ++Q+K+I+N   RQVTFSKRR G+ KKA E+SVLCDA+VAL+IFS+ GKLFEYS+ S M++ILE++  +    K L   D    E  +LE+        E  EK+   R   GE++  LSL+ELQ LE  L   +  +            + LQ++ K+L + N  L +++ E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARV-EVLEKNK--RNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKE 174          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 72/177 (40.68%), Postives = 103/177 (58.19%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVH---SKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R ++Q+K+I+N   RQVTFSKRR G+ KKA E+SVLCDA+VALI+FS+ GKLFEYS+ S M+ ILE++  +    K L   D    E  +LE+        E  EK+   R   GE++  LSL+ELQ LE  L+  +  +            + LQ++ K L + N  L +++ E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARV-EVLEKNK--RNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKE 174          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.781e-25
Identity = 69/176 (39.20%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVS 724
            M R K+++K+I+N  +RQVTF+KRR G+ KKA ELS+LCDA+VALIIFS  G+LFE+SSSS M + LE++R  + N +    P  E+   E   Y  L           R + GE++  LS++EL++LE  +EV L ++             +L+ + + L + N+ LR+++ E S
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQE---YLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETS 173          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.781e-25
Identity = 69/176 (39.20%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVS 724
            M R K+++K+I+N  +RQVTF+KRR G+ KKA ELS+LCDA+VALIIFS  G+LFE+SSSS M + LE++R  + N +    P  E+   E   Y  L           R + GE++  LS++EL++LE  +EV L ++             +L+ + + L + N+ LR+++ E S
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQE---YLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETS 173          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.781e-25
Identity = 63/170 (37.06%), Postives = 111/170 (65.29%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS-SMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFK-EAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLR 703
            M R + ++K+I+N T+RQVTFSKRR G+ KKA ELSVLCDA+VALI+FS  G+L+E++S+ S+++ +++++ ++K+         ++Q ++++   +  K EA ++S   R++ GE + G S+EEL+ LE  LE  L ++             +L+ + + L+++NE LR
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESR--RKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLR 168          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.781e-25
Identity = 68/185 (36.76%), Postives = 108/185 (58.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS-SSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLL-------RQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730
            M R KI+IK+I+N T+RQVTF KRR G+ KKA EL++LCDA++ALI+FS+ G+L+E+S+ +S +  +E+++  S +       S    +++ N++    +EAA+  H +       R + GE I  ++ +EL+ LE  LE G+ R+              +Q+R   L  EN  LR +VAE   A
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASAS------TSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERA 179          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.938e-25
Identity = 70/177 (39.55%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHRVHSKNLERVDQPSVE---LQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R ++++K+I+N   RQVTF+KRR G+ KKA ELSVLCDA+VALIIFS  GKL+E+ SSSSM   LE+++  +      + PS E   ++L     Y  L +         R + GE++  LS +EL+ LER L+  L ++            N+LQ + ++L E N+ LR ++A+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLAD 177          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.938e-25
Identity = 67/170 (39.41%), Postives = 103/170 (60.59%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQ 709
            M R K ++K+I+NAT+RQVTFSKRR G+ KKA ELSVLCDA+VAL+IFS   KL+E+SSSS+   +E+++   K +    + +   Q   +   S L K+  +     R++ GE I   S+EELQ+LE  L+  L R+             +L+   + L++EN+ L+++
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKEIGNNHKRNDNSQQARDET-SGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK 169          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.450e-25
Identity = 69/177 (38.98%), Postives = 103/177 (58.19%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHS---KNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R ++Q+K+I+N   RQVTFSKRR G+ KKA E+SVLCDA+V LI+FS  GKLFEY++ S M+ ILE++  +S   K L   D  S     LE+        E  +++   +   GE++  LS++ELQ LE  L+  L  +            + LQ++ + L E+N +L ++V E
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARL-EVLQRNQ--KHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKE 174          
The following BLAST results are available for this feature:
BLAST of CF835329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AG_PANGI2.217e-2537.30Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AGL8_SINAL2.217e-2540.68Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_ARATH2.217e-2540.68Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
MADS1_ORYSJ3.781e-2539.20MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI3.781e-2539.20MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MAD56_ORYSJ3.781e-2537.06MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD21_ORYSJ3.781e-2536.76MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AGL9_SINAL4.938e-2539.55Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL19_ARATH4.938e-2539.41Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
AGL8_SOLLC6.450e-2538.98Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835329 ID=CF835329; Name=CF835329; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTCCTTTTTTTAATCTCTTTTCCTTCTCCCATATTCTCTCGT
CTCTCTCTATCGCTCATTGGTGGCATTTTCAAAGTCTCCATTCCGAAGTT
TTAAACTCTCCCACAAAACCAAACCACATTACCAGCCGATCTCCATAAGC
CAAATTGGGAAGATCACAGCAGTAACAGCTAGCAAGCAAGGGCAAAGAGA
TGGCGAGAGAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGG
CAAGTCACTTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGA
GCTTTCTGTTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCA
CAGGCAAGCTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAA
AAGCACCGTGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGT
TGAGTTGCAGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAG
CTGCTGAAAAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCAT
GGATTAAGTTTAGAAGAATTGCAGAAGCTTGAAAGGTCTCTTGAAGTTGG
ATTGGGACGAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTA
ATGAACTCCAAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTA
AGACAGCAAGTGGCGGAGGTATCAAATGCATA
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