CF835329

Overview
NameCF835329
Unique NameCF835329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 61/174 (35.06%), Postives = 102/174 (58.62%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEV 721
            M R KI+IK+I+N++ RQVT+SKRR GI KKA+E+SVLCDA V++IIF+++GK+ E+ S S   +      H  + +R+  P  E     +N  + + KE       LR ++GE+I  L+ +EL  LE +LE G   +              +++  +++ EEN+ L+ ++ ++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHL---DNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSAL----KNKQMEFVRMMRKHNEMVEEENQSLQFKLRQM 167          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 62/179 (34.64%), Postives = 105/179 (58.66%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-MKEILEKHRVHSKNLERVDQP-SVELQLLENNNYSMLFKEAAEKSHLLRQMR---GEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEV 721
            M R K+ +++I+N  +RQVTF+KRR G+ KKA ELS+LCDA+VAL++FS  G+L+++SSSS M + LE+++ +    +    P S E+Q    NNY       A    L +  R   GE++  L+  EL++LE  +   L ++             +L+R+ ++L + N  L++++ E+
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQ----NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEI 175          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 50/138 (36.23%), Postives = 85/138 (61.59%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRV 613
            M R ++++KKI+N T RQVTFSKRR G+ KKA EL++LCDA + +I+FS TGK++EYSS   +      R       R ++  V+ ++++    + +  E      ++RQ  G+++  L+L+++  LE+ +E  L +V
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAPSTRFEEMDVQQRIIQ--EMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKV 136          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 57/175 (32.57%), Postives = 97/175 (55.43%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS-SSMKEILEKHRV-HSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R+K++IK+I+N ++RQVTFSKRR G+ +KA +LS+LC++ +A+++ S +GKL++ +S  +M +I++++ + H+  LE +D       L E     +  KE  E   +  ++    +   S++ L  LE  LE  L                 LQ+   LL EEN+ L  QV +
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADELEALD-------LAEKTRNYLPLKELLE--IVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQVGK 166          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.100e-19
Identity = 57/177 (32.20%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS--MKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLS-LEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEV 721
            M + KI++K+I++AT RQVTFSKRR G  KKA EL+VLCDA V +++FS  GKLF++ S    + E+  ++ + ++N    +    + Q++     + L  E  +    LR+  GE++  +S ++EL +L+  LE  L +V             +++R  + + E+N  L + V ++
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMV--MEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMVTKI 175          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.049e-19
Identity = 62/173 (35.84%), Postives = 102/173 (58.96%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS--MKEILEKHRVHSKNL---ERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLR 703
            M R KI+IK+I+N++ RQVT+SKRR GI KKA+E++VLCDA V+LIIF  +GK+ EY S S  + ++L+ ++  S       + +  S E+  ++  N +M  K        LR ++GE+I+ L+ +EL  LE  L  GL  +              +++  ++L EE+++L+
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVK--------LRHLKGEDINSLNHKELMVLEEGLTNGLSSI----SAKQSEILRMVRKNDQILEEEHKQLQ 161          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 58/174 (33.33%), Postives = 100/174 (57.47%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS-SMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R K+Q+++I+N   RQVTF KRR G+ KKA ELSVLCDADV +IIFS+ GKL E +++ +M  ++E+++ +     +++  +++ Q +      +L +E       LR   G     ++L++L  LE+ LE+ + ++              L+ +  +L E NE L+++V E
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAG-GQMEPGALQRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKE 173          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 55/134 (41.04%), Postives = 88/134 (65.67%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS--SSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLE 595
            MAR KIQIK+I+N T RQVT+SKRR G+FKKA EL+VLCDA V++I+FS++ KL EY S  ++ KEI++ +    + +  VD  + + + ++     +L      ++  ++Q  GE +  L ++EL++LE  +E
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLY----QTISDVDVWATQYERMQETKRKLLETNRNLRTQ-IKQRLGECLDELDIQELRRLEDEME 129          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 57/142 (40.14%), Postives = 89/142 (62.68%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHL-------LRQMRGEEIHGLSLEELQKLERSLEVGL 604
            MAR KIQIK+I+N T RQVT+SKRR G+FKKA EL+VLCDA V++I+ S+TGKL E+ S S         + +K L  + Q +V + L  N++Y  + ++  +   +       +RQ  GE ++ L+ E+L++L  +++  L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPS---------ITTKQLFDLYQKTVGVDLW-NSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSL 132          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 62/181 (34.25%), Postives = 105/181 (58.01%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS-SMKEILEKHRVHSKNL------ERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIH-GLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            MAR K+Q+++I+N   RQVTF KRR G+ KKA ELS+LC+AD+ +IIFSA GKL++ +++ +M+E++E+++  S         +R+D P  E  +L+    ++L K        LR + G   +  +++EEL  LER LE+ +  +              L+ +  +L   NE L++++ E
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMD-PKQEAMVLK-QEINLLQKG-------LRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172          
The following BLAST results are available for this feature:
BLAST of CF835329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
GLOB_ANTMA4.783e-2035.06Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MAD34_ORYSJ8.159e-2034.64MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MAD31_ORYSJ1.392e-1936.23MADS-box transcription factor 31 OS=Oryza sativa s... [more]
AGL31_ARATH2.374e-1932.57Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MAD30_ORYSJ3.100e-1932.20MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MADS2_PETHY4.049e-1935.84Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
MAD33_ORYSJ6.907e-1933.33MADS-box transcription factor 33 OS=Oryza sativa s... [more]
AP3_ARATH6.907e-1941.04Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MADS1_PETHY1.178e-1840.14Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD26_ORYSJ1.178e-1834.25MADS-box transcription factor 26 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835329 ID=CF835329; Name=CF835329; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTCCTTTTTTTAATCTCTTTTCCTTCTCCCATATTCTCTCGT
CTCTCTCTATCGCTCATTGGTGGCATTTTCAAAGTCTCCATTCCGAAGTT
TTAAACTCTCCCACAAAACCAAACCACATTACCAGCCGATCTCCATAAGC
CAAATTGGGAAGATCACAGCAGTAACAGCTAGCAAGCAAGGGCAAAGAGA
TGGCGAGAGAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGG
CAAGTCACTTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGA
GCTTTCTGTTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCA
CAGGCAAGCTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAA
AAGCACCGTGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGT
TGAGTTGCAGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAG
CTGCTGAAAAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCAT
GGATTAAGTTTAGAAGAATTGCAGAAGCTTGAAAGGTCTCTTGAAGTTGG
ATTGGGACGAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTA
ATGAACTCCAAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTA
AGACAGCAAGTGGCGGAGGTATCAAATGCATA
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