CF835366
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27 Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = -3 Query: 287 RTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCG 622 RT+ KV K GSVGRS+D++R+ Y+ELR +L +MFGIEG+ EDP S W+LV+VD END+LL+GDDPWE FV+ V IKILS +VQ+M G + P + Q A S G+ G Sbjct: 1037 RTYTKVQKRGSVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGNFAGVPVTNQ-ACSGGDSG 1147
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 2.552e-27 Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = -3 Query: 344 RTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 622 RTF KVYK G+VGRS+DI R+S Y EL+ L +MFGIEG+ ED R GW+LV+ D E+D+LLLGDDPWE FV+ V I+ILSP++VQ+M G Sbjct: 1009 RTFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDG 1101
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27 Identity = 59/116 (50.86%), Postives = 82/116 (70.69%), Query Frame = -3 Query: 284 RTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVE---SFSPSSGQRANSRGNCGR 622 RTF KVYK G+VGRS+D+S+FS Y+EL+ L +MF IEG+ E+ R GW+LV+ D E+D+LLLGDDPWE FV V I+ILSP++VQ+M +G + + P+ ++ GN R Sbjct: 1027 RTFTKVYKRGAVGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQMSLEGCDLGNNIPPNQACSSSDGGNAWR 1142
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27 Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = -3 Query: 344 DQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 640 +Q RTF KV K GSVGRS+DI+R+ Y+ELR +L MFGI+G+ EDP R W+LV+VD END+LL+GDDPWE FV V IKILS +VQ+M G Sbjct: 934 NQTQRMRTFTKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMSLDG 1032
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27 Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = -3 Query: 344 DQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 640 +Q RTF KV K GSVGRS+DI+R+ Y+ELR +L MFGI+G+ EDP R W+LV+VD END+LL+GDDPWE FV V IKILS +VQ+M G Sbjct: 934 NQTQRMRTFTKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMSLDG 1032
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26 Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = -3 Query: 341 PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGV 628 P RT+ KV K GSVGRS+D++ F +Y+ELR + MFG++GK E P S W+LV+VD ENDVLL+GDDPWE F++ V I+ILSP +VQ+M E G+ Sbjct: 850 PVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGM 945
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26 Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = -3 Query: 341 PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGV 628 P RT+ KV K GSVGRS+D++ F +Y+ELR + MFG++GK E P S W+LV+VD ENDVLL+GDDPWE F++ V I+ILSP +VQ+M E G+ Sbjct: 850 PVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGM 945
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3) HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25 Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = -3 Query: 338 RTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVE 622 RT+ KV K+GSVGRS+D++ F Y EL+ + MFG+EG P SGW+LV+VD E+DVLL+GDDPWE FV V I+ILSP +VQ+M E+G++ Sbjct: 793 RTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMK 887
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 2.641e-24 Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = -3 Query: 293 RTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM---GEQGVESFSPSSGQRANSRGN 622 RT+ KV+K G+VGRS+DI+R+S Y+EL+ ++ +MFGIEG+ D R GW+LV+ D E DVLL+GDDPWE FV V I+ILSP++ +M G+ G +SF P+ ++ G+ Sbjct: 998 RTYTKVHKRGAVGRSIDINRYSGYDELKHDVARMFGIEGQLGDQNRVGWKLVYEDHEKDVLLVGDDPWEDFVKCVRCIRILSPQEEMQMRLVGDFG-DSFLPNQACSSSDGGH 1109
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.301e-18 Identity = 45/98 (45.92%), Postives = 69/98 (70.41%), Query Frame = -3 Query: 347 QLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQ 637 Q+ TR+ KV+K G ++GRS+D+S+FS+Y+EL+ EL +MF +G+ ++ WQ+V+ D E D++L+GDDPWE F S V I I + E+VQKM + Sbjct: 687 QVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKN-WQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSK 783 The following BLAST results are available for this feature:
BLAST of CF835366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835366 ID=CF835366; Name=CF835366; organism=Citrus sinensis; type=EST; length=660bpback to top |