CF835366

Overview
NameCF835366
Unique NameCF835366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835366_ssr130 microsatellite CF835366_ssr130:130..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6347 contig Csv1_Contig6347:30..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.954e-27
Identity = 62/112 (55.36%), Postives = 81/112 (72.32%), Query Frame = -3
Query:  287 RTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCG 622
            RT+ KV K GSVGRS+D++R+  Y+ELR +L +MFGIEG+ EDP  S W+LV+VD END+LL+GDDPWE FV+ V  IKILS  +VQ+M   G  +  P + Q A S G+ G
Sbjct: 1037 RTYTKVQKRGSVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGNFAGVPVTNQ-ACSGGDSG 1147          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.552e-27
Identity = 57/93 (61.29%), Postives = 72/93 (77.42%), Query Frame = -3
Query:  344 RTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 622
            RTF KVYK G+VGRS+DI R+S Y EL+  L +MFGIEG+ ED  R GW+LV+ D E+D+LLLGDDPWE FV+ V  I+ILSP++VQ+M   G
Sbjct: 1009 RTFTKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWEEFVNCVRCIRILSPQEVQQMSLDG 1101          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27
Identity = 59/116 (50.86%), Postives = 82/116 (70.69%), Query Frame = -3
Query:  284 RTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVE---SFSPSSGQRANSRGNCGR 622
            RTF KVYK G+VGRS+D+S+FS Y+EL+  L +MF IEG+ E+  R GW+LV+ D E+D+LLLGDDPWE FV  V  I+ILSP++VQ+M  +G +   +  P+    ++  GN  R
Sbjct: 1027 RTFTKVYKRGAVGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQMSLEGCDLGNNIPPNQACSSSDGGNAWR 1142          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = -3
Query:  344 DQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 640
            +Q    RTF KV K GSVGRS+DI+R+  Y+ELR +L  MFGI+G+ EDP R  W+LV+VD END+LL+GDDPWE FV  V  IKILS  +VQ+M   G
Sbjct:  934 NQTQRMRTFTKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMSLDG 1032          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.699e-27
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = -3
Query:  344 DQLTPTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQG 640
            +Q    RTF KV K GSVGRS+DI+R+  Y+ELR +L  MFGI+G+ EDP R  W+LV+VD END+LL+GDDPWE FV  V  IKILS  +VQ+M   G
Sbjct:  934 NQTQRMRTFTKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMSLDG 1032          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = -3
Query:  341 PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGV 628
            P RT+ KV K GSVGRS+D++ F +Y+ELR  +  MFG++GK E P  S W+LV+VD ENDVLL+GDDPWE F++ V  I+ILSP +VQ+M E G+
Sbjct:  850 PVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGM 945          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = -3
Query:  341 PTRTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGV 628
            P RT+ KV K GSVGRS+D++ F +Y+ELR  +  MFG++GK E P  S W+LV+VD ENDVLL+GDDPWE F++ V  I+ILSP +VQ+M E G+
Sbjct:  850 PVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGM 945          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.322e-25
Identity = 53/95 (55.79%), Postives = 71/95 (74.74%), Query Frame = -3
Query:  338 RTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVE 622
            RT+ KV K+GSVGRS+D++ F  Y EL+  +  MFG+EG    P  SGW+LV+VD E+DVLL+GDDPWE FV  V  I+ILSP +VQ+M E+G++
Sbjct:  793 RTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMK 887          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.641e-24
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = -3
Query:  293 RTFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM---GEQGVESFSPSSGQRANSRGN 622
            RT+ KV+K G+VGRS+DI+R+S Y+EL+ ++ +MFGIEG+  D  R GW+LV+ D E DVLL+GDDPWE FV  V  I+ILSP++  +M   G+ G +SF P+    ++  G+
Sbjct:  998 RTYTKVHKRGAVGRSIDINRYSGYDELKHDVARMFGIEGQLGDQNRVGWKLVYEDHEKDVLLVGDDPWEDFVKCVRCIRILSPQEEMQMRLVGDFG-DSFLPNQACSSSDGGH 1109          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.301e-18
Identity = 45/98 (45.92%), Postives = 69/98 (70.41%), Query Frame = -3
Query:  347 QLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQ 637
            Q+  TR+  KV+K G ++GRS+D+S+FS+Y+EL+ EL +MF  +G+     ++ WQ+V+ D E D++L+GDDPWE F S V  I I + E+VQKM  +
Sbjct:  687 QVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKN-WQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSK 783          
The following BLAST results are available for this feature:
BLAST of CF835366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ARFG_ARATH1.954e-2755.36Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]
ARFE_ORYSJ2.552e-2761.29Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]
ARFS_ORYSJ4.354e-2750.86Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSJ9.699e-2758.59Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI9.699e-2758.59Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFK_ORYSJ1.267e-2657.29Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI1.267e-2657.29Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFE_ARATH5.322e-2555.79Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFU_ORYSJ2.641e-2449.56Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFD_ORYSJ6.301e-1845.92Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835366 ID=CF835366; Name=CF835366; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTTTTAACGCTATGACAGCACTTTCATATTAAAACAACCAAAACAC
GGCCTAAAGAAATAGGTTCCAATTTGCAACGTAGTTTAGTTATCTAATCG
ACTTCAGTATTATATTTATCGTACACAAGCATCATCATCATTAAACTACT
AGTCTAGTCTGAAACGTGGGTTTCAGTTATCTGGGAACAATAAACCTGGA
GACACAGGGGGGTTGCACACACAGTTCGTGGCATTATGTAATAGAGTTAT
CTAACATCAATATTCAAGCGAACCAACAGGATCACGACCGCAATTGCCAC
GGCTATTTGCCCGTTGACCCGAGCTTGGGCTGAAGGACTCAACCCCTTGC
TCACCCATTTTCTGCACATCCTCCGGTGAAAGTATCTTGATATACCAAAC
ATTACTCACAAATGCCTCCCATGGGTCGTCTCCAAGGAGAAGCACGTCAT
TCTCCCTGTCGACGAATACAAGCTGCCAGCCTGATCTAAGAGGGTCTTCA
AACTTCCCCTCAATTCCAAACATCTGACCCAGCTCTTCCCGCAGCTCATT
ATAGCTGCTGAACCGGGAGATGTCTAGTGAGCGCCCAACCGAACCCGATT
TATAGACCTTGACAAATGTCCGAGTTGGAGTCAGTTGGTCAATTTGCCCT
ACATTGTGCA
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