CF835366

Overview
NameCF835366
Unique NameCF835366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835366_ssr130 microsatellite CF835366_ssr130:130..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6347 contig Csv1_Contig6347:30..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  221 NVGQIDQLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY*C*ITLLHNATNC 655
            N+    Q   TR+  KV+K G ++GRS+D+++F+ Y EL  EL  MF   G+ + P +  W +V+ D E D++L+GDDPW  F   V  I I + E+VQ+M    + S S  S   +  RG+ GR+  G     C  T   N+ NC
Sbjct:  714 NMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKE-WMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRG-----CLSTSSLNSENC 853          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  221 NVGQIDQLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY*C*ITLLHNATNC 655
            N+    Q   TR+  KV+K G ++GRS+D+++F+ Y EL  EL  MF   G+ + P +  W +V+ D E D++L+GDDPW  F   V  I I + E+VQ+M    + S S  S   +  RG+ GR+  G     C  T   N+ NC
Sbjct:  714 NMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKE-WMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRG-----CLSTSSLNSENC 853          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17
Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  221 NVGQIDQLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY*C*ITLLHNATNC 655
            N+    Q   +R+  KV+K G ++GRS+D+++F+ Y+EL  EL QMF   G+     ++ W +V+ D E D++L+GDDPW  F + V  I I + E+VQKM    + S S  S   +  RG  G    G L      T   N+ NC
Sbjct:  702 NIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKN-WMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDSRSTSVERGLVGEGLQGGLS-----TPSLNSENC 841          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16
Identity = 39/97 (40.21%), Postives = 64/97 (65.98%), Query Frame = -3
Query:  350 QLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGE 637
            Q +  R   KV+K GS VGR++D+SR + Y++L  EL ++F +EG   DP   GW++++ D END++++GDDPW  F + VW I + + E+V+   +
Sbjct:  660 QSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDP-EKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVENAND 755          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.478e-14
Identity = 39/91 (42.86%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  356 TRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 625
            +R+  KV+K G ++GRS+D+S+F +Y EL  EL ++F   G+   P +  W +V+ D END++L+GDDPW+ F   V  I I + E+V+KM
Sbjct:  732 SRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAP-KKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKM 821          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = -3
Query:  356 QIDQLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 646
            Q  Q + TR+  KV   G  VGR++D++    YNEL +++ ++F I+G+     R+ W++VF D E D++L+GDDPW  F + V  I I S E+V+KM
Sbjct:  515 QSKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS--RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKM 610          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13
Identity = 40/119 (33.61%), Postives = 71/119 (59.66%), Query Frame = -3
Query:  293 QIDQLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGN 646
            Q  Q    R+  KV+  GS VGR++D++R   Y +L ++L +MF I+G+  +  +  WQ+V+ D E+D++++GDDPW  F   V  I I +PE+V+K+  +   + +     +A++  N
Sbjct:  534 QESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKK-WQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVNARMQLKADAEEN 651          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = -3
Query:  356 QLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 637
            Q T TR+ +KV   G+ VGR++D++   SY+EL +EL +MF IEG+     +  W +VF D E D +L+GDDPW  F      + I   ++V+KM
Sbjct:  506 QQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSP--KDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKM 598          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = -3
Query:  362 QLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQ 637
            Q    R+  KV   G +VGR++D+++ + Y +LR +L +MF I+G     L+  WQ+V+ D E+D++L+GDDPW+ F S V  I I S E+ +
Sbjct:  542 QSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKR-WQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEEAK 633          
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 36/95 (37.89%), Postives = 61/95 (64.21%), Query Frame = -3
Query:  356 QLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 637
            Q    R+  KV   G +VGR++D++R   Y++LR +L +MF I+G+    L+  W++V+ D E+D++L+GDDPW  F S V  I I + E+ +++
Sbjct:  543 QSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKK-WKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQL 636          
The following BLAST results are available for this feature:
BLAST of CF835366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ARFW_ORYSJ1.075e-1736.99Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI1.075e-1736.99Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFX_ORYSJ6.967e-1736.30Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFD_ARATH2.647e-1640.21Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFB_ARATH2.478e-1442.86Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFI_ARATH2.098e-1340.82Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFA_ARATH3.578e-1333.61Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFK_ARATH3.956e-1241.05Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFI_ORYSJ6.748e-1239.78Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFG_ORYSJ1.503e-1137.89Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835366 ID=CF835366; Name=CF835366; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTTTTAACGCTATGACAGCACTTTCATATTAAAACAACCAAAACAC
GGCCTAAAGAAATAGGTTCCAATTTGCAACGTAGTTTAGTTATCTAATCG
ACTTCAGTATTATATTTATCGTACACAAGCATCATCATCATTAAACTACT
AGTCTAGTCTGAAACGTGGGTTTCAGTTATCTGGGAACAATAAACCTGGA
GACACAGGGGGGTTGCACACACAGTTCGTGGCATTATGTAATAGAGTTAT
CTAACATCAATATTCAAGCGAACCAACAGGATCACGACCGCAATTGCCAC
GGCTATTTGCCCGTTGACCCGAGCTTGGGCTGAAGGACTCAACCCCTTGC
TCACCCATTTTCTGCACATCCTCCGGTGAAAGTATCTTGATATACCAAAC
ATTACTCACAAATGCCTCCCATGGGTCGTCTCCAAGGAGAAGCACGTCAT
TCTCCCTGTCGACGAATACAAGCTGCCAGCCTGATCTAAGAGGGTCTTCA
AACTTCCCCTCAATTCCAAACATCTGACCCAGCTCTTCCCGCAGCTCATT
ATAGCTGCTGAACCGGGAGATGTCTAGTGAGCGCCCAACCGAACCCGATT
TATAGACCTTGACAAATGTCCGAGTTGGAGTCAGTTGGTCAATTTGCCCT
ACATTGTGCA
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