CF835366
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17 Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = -3 Query: 221 NVGQIDQLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY*C*ITLLHNATNC 655 N+ Q TR+ KV+K G ++GRS+D+++F+ Y EL EL MF G+ + P + W +V+ D E D++L+GDDPW F V I I + E+VQ+M + S S S + RG+ GR+ G C T N+ NC Sbjct: 714 NMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKE-WMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRG-----CLSTSSLNSENC 853
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17 Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = -3 Query: 221 NVGQIDQLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY*C*ITLLHNATNC 655 N+ Q TR+ KV+K G ++GRS+D+++F+ Y EL EL MF G+ + P + W +V+ D E D++L+GDDPW F V I I + E+VQ+M + S S S + RG+ GR+ G C T N+ NC Sbjct: 714 NMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKE-WMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRG-----CLSTSSLNSENC 853
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17 Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = -3 Query: 221 NVGQIDQLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGNCGRDPVGSLEY*C*ITLLHNATNC 655 N+ Q +R+ KV+K G ++GRS+D+++F+ Y+EL EL QMF G+ ++ W +V+ D E D++L+GDDPW F + V I I + E+VQKM + S S S + RG G G L T N+ NC Sbjct: 702 NIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKN-WMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDSRSTSVERGLVGEGLQGGLS-----TPSLNSENC 841
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.647e-16 Identity = 39/97 (40.21%), Postives = 64/97 (65.98%), Query Frame = -3 Query: 350 QLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGE 637 Q + R KV+K GS VGR++D+SR + Y++L EL ++F +EG DP GW++++ D END++++GDDPW F + VW I + + E+V+ + Sbjct: 660 QSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDP-EKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVENAND 755
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.478e-14 Identity = 39/91 (42.86%), Postives = 61/91 (67.03%), Query Frame = -3 Query: 356 TRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 625 +R+ KV+K G ++GRS+D+S+F +Y EL EL ++F G+ P + W +V+ D END++L+GDDPW+ F V I I + E+V+KM Sbjct: 732 SRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAP-KKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKM 821
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13 Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = -3 Query: 356 QIDQLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 646 Q Q + TR+ KV G VGR++D++ YNEL +++ ++F I+G+ R+ W++VF D E D++L+GDDPW F + V I I S E+V+KM Sbjct: 515 QSKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS--RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKM 610
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13 Identity = 40/119 (33.61%), Postives = 71/119 (59.66%), Query Frame = -3 Query: 293 QIDQLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKMGEQGVESFSPSSGQRANSRGN 646 Q Q R+ KV+ GS VGR++D++R Y +L ++L +MF I+G+ + + WQ+V+ D E+D++++GDDPW F V I I +PE+V+K+ + + + +A++ N Sbjct: 534 QESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKK-WQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVNARMQLKADAEEN 651
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12 Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = -3 Query: 356 QLTPTRTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 637 Q T TR+ +KV G+ VGR++D++ SY+EL +EL +MF IEG+ + W +VF D E D +L+GDDPW F + I ++V+KM Sbjct: 506 QQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSP--KDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKM 598
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12 Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = -3 Query: 362 QLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQ 637 Q R+ KV G +VGR++D+++ + Y +LR +L +MF I+G L+ WQ+V+ D E+D++L+GDDPW+ F S V I I S E+ + Sbjct: 542 QSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKR-WQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEEAK 633
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11 Identity = 36/95 (37.89%), Postives = 61/95 (64.21%), Query Frame = -3 Query: 356 QLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 637 Q R+ KV G +VGR++D++R Y++LR +L +MF I+G+ L+ W++V+ D E+D++L+GDDPW F S V I I + E+ +++ Sbjct: 543 QSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKK-WKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQL 636 The following BLAST results are available for this feature:
BLAST of CF835366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835366 ID=CF835366; Name=CF835366; organism=Citrus sinensis; type=EST; length=660bpback to top |