CF835366

Overview
NameCF835366
Unique NameCF835366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835366_ssr130 microsatellite CF835366_ssr130:130..141. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6347 contig Csv1_Contig6347:30..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = -3 
Query:  356 TRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 625
            +R+  KV   G +VGR++D++   SY+EL +EL +MF I+G+     R  W +VF D E D++L GDDPW  F      I I S ++V+KM
Sbjct:  488 SRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLL--ARDKWIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKM 576
[Close]
BLAST of CF835366 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 35/98 (35.71%), Postives = 61/98 (62.24%), Query Frame = -3 
Query:  356 QIDQLTPTRTFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPEDVQKM 646
            Q  Q + TRT  KV   G ++GR++D+S  + Y++L  EL ++F ++G+ +   R+ W++ F + E D +L+G+DPW  F + V  I I S E+V+ +
Sbjct:  502 QSKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQ--ARNQWEIAFTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNL 597
The following BLAST results are available for this feature:
BLAST of CF835366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ARFR_ARATH3.349e-1141.76Auxin response factor 18 OS=Arabidopsis thaliana G... [more]
ARFN_ARATH4.374e-1135.71Putative auxin response factor 14 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835366 ID=CF835366; Name=CF835366; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTTTTAACGCTATGACAGCACTTTCATATTAAAACAACCAAAACAC
GGCCTAAAGAAATAGGTTCCAATTTGCAACGTAGTTTAGTTATCTAATCG
ACTTCAGTATTATATTTATCGTACACAAGCATCATCATCATTAAACTACT
AGTCTAGTCTGAAACGTGGGTTTCAGTTATCTGGGAACAATAAACCTGGA
GACACAGGGGGGTTGCACACACAGTTCGTGGCATTATGTAATAGAGTTAT
CTAACATCAATATTCAAGCGAACCAACAGGATCACGACCGCAATTGCCAC
GGCTATTTGCCCGTTGACCCGAGCTTGGGCTGAAGGACTCAACCCCTTGC
TCACCCATTTTCTGCACATCCTCCGGTGAAAGTATCTTGATATACCAAAC
ATTACTCACAAATGCCTCCCATGGGTCGTCTCCAAGGAGAAGCACGTCAT
TCTCCCTGTCGACGAATACAAGCTGCCAGCCTGATCTAAGAGGGTCTTCA
AACTTCCCCTCAATTCCAAACATCTGACCCAGCTCTTCCCGCAGCTCATT
ATAGCTGCTGAACCGGGAGATGTCTAGTGAGCGCCCAACCGAACCCGATT
TATAGACCTTGACAAATGTCCGAGTTGGAGTCAGTTGGTCAATTTGCCCT
ACATTGTGCA
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