CF835368

Overview
NameCF835368
Unique NameCF835368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835368_ssr362 microsatellite CF835368_ssr362:362..377. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7102 contig Csv1_Contig7102:820..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835368 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 37/95 (38.95%), Postives = 50/95 (52.63%), Query Frame = 3
Query:    3 AIWTWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 287
            AIW WMT  + ++PS HD  +G W P+  DT + R P +G   NI+ G   CG G  DA  + + +Y  Y D+LG     AG    L C  Q+ F
Sbjct:  171 AIWFWMT-AQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLG-----AGYGSNLDCYNQRNF 259          
BLAST of CF835368 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 3
Query:    3 AIWTWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPNTAPSAA 314
            A+W WMTP + ++PS+HD   G W P+  D  + R P +G   NI+ G   CG G  D + N +  Y  Y    G+G    G N  L C  Q+ FN  ++   A
Sbjct:  241 ALWFWMTP-QGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIG---TGGN--LDCYNQRPFNSGSSVGLA 338          
BLAST of CF835368 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 3
Query:    3 AIWTWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPNTAPSAAS 317
            A+W WMT    SQPS H    G W PT  D+ + R P +G T NIL G   C  G+  A  + V+ Y  Y D+LGVG    GPN  L C  Q  F+ +   ++A+
Sbjct:  242 ALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVG---YGPN--LDCFGQAPFDGDIMSASAA 339          
BLAST of CF835368 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 36/96 (37.50%), Postives = 49/96 (51.04%), Query Frame = 3
Query:    3 AIWTWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFN 290
            A W WMTP +  +PS HD  +G W P+ +D  + R P FG   NI+ G   CGQG    + + +  Y  Y D LGVG         L C  Q+++N
Sbjct:  224 AFWFWMTP-QSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGY-----GNNLDCYNQRSYN 313          
BLAST of CF835368 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 3
Query:    3 AIWTWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPNTAPSAAS 317
            A+W WMT    SQPS H    G W PT  D+ + R P +G T NIL G   C  G+  A  + V+ Y  Y D+LGVG    GPN  L C  Q  F+     ++A+
Sbjct:  242 ALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVG---YGPN--LDCFGQAPFDGGIMSASAA 339          
BLAST of CF835368 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 34/96 (35.42%), Postives = 47/96 (48.96%), Query Frame = 3
Query:    3 AIWTWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFN 290
            AIW WMT  +  +PS HD   G W P+  D  + R P +G   NI+ G   CG G    + + +  Y  Y  +LGV      P + + C  QK+FN
Sbjct:  237 AIWFWMT-AQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGV-----SPGDNIDCGNQKSFN 326          
BLAST of CF835368 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 33/95 (34.74%), Postives = 48/95 (50.53%), Query Frame = 3
Query:    3 AIWTWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 287
            A+W WMTP +  +PS HD   G W P+  D  + R P +GT  NI+ G   CG+G    + + +  Y  Y D+ G+G       + L C  Q+ F
Sbjct:  219 ALWFWMTP-QSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGY-----GDNLDCYSQRPF 307          
BLAST of CF835368 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 3
Query:    3 AIWTWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 287
            AIW WMTP + ++PS+HD  +G+W P+  D  + R P  G   NI+ G   CG G   A+ + + +Y  Y  +L V      P + L C  Q+ F
Sbjct:  162 AIWFWMTP-QDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNV-----APGDNLDCYNQRNF 250          
BLAST of CF835368 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 3
Query:    3 AIWTWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 287
            AIW WMTP + ++PS+HD   G W P+  D+ + R P +G   NI+ G   CG G  + +++ V  Y  Y  + GV      P   L C  Q++F
Sbjct:  231 AIWFWMTP-QANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGV-----DPGGNLDCNNQRSF 319          
BLAST of CF835368 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 32/98 (32.65%), Postives = 44/98 (44.90%), Query Frame = 3
Query:    3 AIWTWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFNPN 296
            A+W WM P     PS H+   G W P++ D  + R P FG   NI+     C +       N + +YL Y D+L     Q  P + L C  Q+ F  N
Sbjct:  215 ALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDML-----QVDPGDNLYCDNQETFEDN 307          
The following BLAST results are available for this feature:
BLAST of CF835368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CHI8_ORYSJ5.606e-1238.95Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ5.606e-1235.58Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSJ7.321e-1240.00Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_THECC7.321e-1237.50Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI7_ORYSI9.562e-1240.00Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI3_TOBAC9.562e-1235.42Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_PEA9.562e-1234.74Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIP_TOBAC2.130e-1135.79Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIX_PEA2.782e-1135.79Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI8_POPTR8.094e-1132.65Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835368 ID=CF835368; Name=CF835368; organism=Citrus sinensis; type=EST; length=686bp
CTGCAATTTGGACTTGGATGACCCCAGTCAAGAAATCCCAGCCTTCAGCC
CATGATGCCTTTGTTGGCAACTGGAAGCCCACCAAGAATGATACTTTGTC
CAAACGGGGACCTAACTTTGGTACCACAATGAATATCCTCTATGGTGAGA
GCGTATGCGGTCAGGGTGATATTGATGCTATGAACAACATTGTCTCTCAT
TACTTGTATTACCTTGATCTGTTGGGTGTTGGCCGAGAGCAGGCAGGACC
TAATGAAGAACTCTCTTGTGCTGAGCAGAAAGCCTTCAACCCAAACACCG
CACCTTCAGCTGCATCTTCTTGAGGACGTTTATTGTAGCCAAGCTATTAT
TGTGGGAGTGACTCTCTCTCTCTCTCTAGGTGGGTACCATTACAATAAGA
CTGGGGTTAATTAAACTATTTGTTGTAAGTTTTTTTTTTTTTTTCCATCT
TTTCATATATTGCGCAAGGTCAATTAGTGTGTGGATTGGTCTGCCCCTCT
TCATTGCCGCTGTAGATTTGAGATTCATTTGGTTTGTAAAATCTTCGTTA
TATCTGGTTACATATGTAATGATGAACCGCATGAACCACTCGTGTGTTTC
AATAGCAGAATTGTAAAGTATATGCTTATATTCCATTTATTCCGGGATAT
CGACTCTTAGTTTCGTTTTTAAAAAAAAAAAAAAAA
back to top