CF835373

Overview
NameCF835373
Unique NameCF835373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:319..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.524e-36
Identity = 77/161 (47.83%), Postives = 107/161 (66.46%), Query Frame = 2
Query:   50 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE VYYFPQG+IE V+AST +  ++  P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q     + E       R  V+SF K LTASDTS +GGFSV ++HA ECLPPLDMS+  P
Sbjct:    8 NAQPKLSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDEIYAEITLMPDTTQVVIPTQSE----NRFRPLVNSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLP 162          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.524e-36
Identity = 77/161 (47.83%), Postives = 105/161 (65.22%), Query Frame = 2
Query:   50 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE+VYYFPQGHIE VE ST +  ++  P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q     + E       R  V+SF K LTASDTS HGGF V ++HA ECLP LDMS+  P
Sbjct:    8 NAQPELSGI--IDGSKSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQNE----NQFRPLVNSFTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLP 162          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.991e-36
Identity = 76/147 (51.70%), Postives = 101/147 (68.71%), Query Frame = 2
Query:   95 EMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            +  L +ELWHACAGPLV++P    RV YFPQGH EQV ASTN+  D Q+P Y +LP +++C++ NV + A+ +TDE +AQ+TL P S +++             +   + FCKTLTASDTSTHGGFSV RR A++  PPLD S+QPP
Sbjct:   22 QRCLNSELWHACAGPLVSLPVVRSRVVYFPQGHSEQVAASTNKEVDAQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPEEQKEPFLPMELGAASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPP 168          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.600e-36
Identity = 82/185 (44.32%), Postives = 111/185 (60.00%), Query Frame = 2
Query:   20 ETGRIPMERQNSNSTTSGVKRVGDPE---MALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLP----------ESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535
            + GR+ +   +S+S +SG            ++Y+ELWHACAGPL  +P++G  V YFPQGH+EQ +A  +  +  ++P +DL  +I+CRV+NVQL A  DTDE + QVTLLP               E   E+E       +   H FCKTLTASDTSTHGGFSV RR A++C  PLD  +Q P+
Sbjct:   31 DKGRLGISPSSSSSCSSGSSSSSSSTGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIPKFDLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPS 214          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.435e-36
Identity = 74/149 (49.66%), Postives = 102/149 (68.46%), Query Frame = 2
Query:   89 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            + +  L +ELWHACAGPLV +P  G RV YFPQGH EQV ASTN+  +  +P Y +LP++++C++ +V + A+ +TDE +AQ+TL P + Q++N            +   + FCKTLTASDTSTHGGFSV RR A+   PPLD ++QPP
Sbjct:   23 EEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPP 171          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.435e-36
Identity = 74/149 (49.66%), Postives = 102/149 (68.46%), Query Frame = 2
Query:   89 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            + +  L +ELWHACAGPLV +P  G RV YFPQGH EQV ASTN+  +  +P Y +LP++++C++ +V + A+ +TDE +AQ+TL P + Q++N            +   + FCKTLTASDTSTHGGFSV RR A+   PPLD ++QPP
Sbjct:   23 EEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPP 171          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.435e-36
Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = 2
Query:   65 TSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            T G K+V      + +ELWHACAGPLV +P+ G  VYYFPQGH EQV A+T ++ + ++P Y +LPS++LC+V N+ L A+ DTDE +AQ+TL P +++ +             +     FCK LTASDTSTHGGFSV RR A++  P LD S QPP
Sbjct:   29 TQGAKKV------INSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPP 179          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.435e-36
Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = 2
Query:   65 TSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            T G K+V      + +ELWHACAGPLV +P+ G  VYYFPQGH EQV A+T ++ + ++P Y +LPS++LC+V N+ L A+ DTDE +AQ+TL P +++ +             +     FCK LTASDTSTHGGFSV RR A++  P LD S QPP
Sbjct:   29 TQGAKKV------INSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPP 179          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.793e-36
Identity = 80/156 (51.28%), Postives = 103/156 (66.03%), Query Frame = 2
Query:   68 SGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            +G KRV      L +ELWHACAGPLV++P  G RV YFPQGH EQV ASTN+  D  +P Y  L  +++C++ NV + A+ +TDE +AQ+TL P + Q++             R   + FCKTLTASDTSTHGGFSV RR A++  PPLD S+QPP
Sbjct:   16 TGEKRV------LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPP 165          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFW_ARATH (Putative auxin response factor 23 OS=Arabidopsis thaliana GN=ARF23 PE=5 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 9.881e-36
Identity = 79/161 (49.07%), Postives = 103/161 (63.98%), Query Frame = 2
Query:   50 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            N  S  SG+  +   +  +Y +LW  CAGPL  +P+ GE+VYYFPQGHIE VEAST +  ++  P  DLPSK+ CRVI + LK E ++DE + ++TL+P++ Q     E E       R  V+SF K LTASDTS  G FSV  +HA ECLPPLDMS+  P
Sbjct:    8 NVQSELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVIAIHLKVENNSDETYVEITLMPDTTQVVIPTENE----NQFRPIVNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIP 162          
The following BLAST results are available for this feature:
BLAST of CF835373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ARFU_ARATH1.524e-3647.83Putative auxin response factor 21 OS=Arabidopsis t... [more]
ARFL_ARATH1.524e-3647.83Auxin response factor 12 OS=Arabidopsis thaliana G... [more]
ARFY_ORYSJ1.991e-3651.70Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFD_ARATH2.600e-3644.32Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFL_ORYSJ4.435e-3649.66Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI4.435e-3649.66Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFK_ORYSJ4.435e-3649.04Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI4.435e-3649.04Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFF_ARATH5.793e-3651.28Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFW_ARATH9.881e-3649.07Putative auxin response factor 23 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835373 ID=CF835373; Name=CF835373; organism=Citrus sinensis; type=EST; length=537bp
ACCCATTAAGTCTTGTAACGAGACTGGTAGAATTCCTATGGAACGGCAGA
ATAGTAATTCCACAACTTCCGGTGTCAAACGAGTTGGGGACCCCGAAATG
GCGCTCTACACGGAGCTGTGGCATGCCTGCGCCGGACCTTTGGTCACCGT
CCCTCGAGAAGGCGAGCGCGTGTACTACTTCCCTCAAGGCCACATAGAGC
AGGTGGAAGCGTCAACTAATCAGGTCGCAGACCAGCAAATGCCAGTTTAT
GATCTTCCTTCAAAGATACTCTGTCGTGTAATTAACGTCCAATTAAAGGC
TGAACCTGATACTGATGAGGCGTTTGCTCAAGTGACTTTACTTCCAGAGT
CAAACCAAGATGAGAACGCGGTGGAGAAAGAACCACCTCCACCCCCGCCA
CCAAGATTTCACGTGCATTCGTTTTGTAAAACACTAACGGCATCGGATAC
AAGTACTCATGGTGGGTTTTCGGTACTGAGACGGCATGCTGATGAGTGTC
TTCCACCCTTGGACATGTCACGGCAGCCTCCCACACA
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