CF835373

Overview
NameCF835373
Unique NameCF835373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:319..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 9.881e-36
Identity = 78/162 (48.15%), Postives = 108/162 (66.67%), Query Frame = 2
Query:   50 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535
            N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE++YYFPQG+IE VEAST +  ++  P+ DLPSK+ CRVI +QLK E ++DE +A++TL+P++ Q     + E       R  V+SF K LTASDTS  GGF V ++HA ECLPPLDMS+  PT
Sbjct:    8 NAQPELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNE----NQFRPLVNSFTKVLTASDTS--GGFFVPKKHAIECLPPLDMSQPLPT 161          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.290e-35
Identity = 76/151 (50.33%), Postives = 100/151 (66.23%), Query Frame = 2
Query:   86 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535
            G  +  + +ELWHACAGPLV +P+ G  VYYF QGH EQV  ST + A  Q+P Y +LPS+++C+V NV L A+ D+DE +AQ++L P  ++ +     +       +     FCKTLTASDTSTHGGFSV RR A++  PPLD S QPPT
Sbjct:   45 GTRKPVINSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPT 195          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.201e-35
Identity = 79/171 (46.20%), Postives = 110/171 (64.33%), Query Frame = 2
Query:   20 ETGRIPMERQNSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            ETG +     N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE+VYYFPQG+IE VEAST +  ++  P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q     + E       R  V+SF K LTASD S +G FSV ++HA ECLPPLDMS+  P
Sbjct:    2 ETGNVV----NAQPELSGI--IDRSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAKITLMPDTTQVVIPTQNE----NQFRPLVNSFTKVLTASDISANGVFSVPKKHAIECLPPLDMSQPLP 162          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.904e-35
Identity = 72/144 (50.00%), Postives = 96/144 (66.67%), Query Frame = 2
Query:  101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            A+ +ELWHACAGPLV++P  G  V YFPQGH EQV AS ++  D       LPSK++C+++++ L A+ +TDE +AQ+TL P +  D +A+          +     FCKTLTASDTSTHGGFSV RR A++  PPLD + QPP
Sbjct:   20 AINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDNIPGYPSLPSKLICKLLSLTLHADSETDEVYAQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPP 163          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 6.404e-35
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = 2
Query:  110 TELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            +ELWHACAGPL+++P  G  V YFPQGH EQV AS  +  D      +LPSK++C + NV L A+P+TDE +AQ+TL P +  D +A+          R     FCKTLTASDTSTHGGFSV RR A++  P LD S QPP
Sbjct:   23 SELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPP 163          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.092e-34
Identity = 76/144 (52.78%), Postives = 96/144 (66.67%), Query Frame = 2
Query:  113 ELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQ---DENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            ELW+ACAGPLV++P +G  + YFPQGH EQV AS  + AD Q+P Y +LPSK++C + +V + A+PDTDE +A++TL P SN    D+  +          R     FCKTLTASDTSTHGGFSV RR A+   P LD S QPP
Sbjct:   25 ELWYACAGPLVSLPPQGSLIVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHSVTMLADPDTDEVYARMTLQPVSNVTQCDKETLLASELALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPP 168          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.427e-34
Identity = 71/144 (49.31%), Postives = 95/144 (65.97%), Query Frame = 2
Query:  101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            A+ +ELWHACAGPLV++P  G  V YFPQGH EQV AS ++  D       LPSK++C+++++ L A+ +TDE + Q+TL P +  D +A+          +     FCKTLTASDTSTHGGFSV RR A++  PPLD + QPP
Sbjct:   20 AINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDNIPGYPSLPSKLICKLLSLTLHADSETDEVYVQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPP 163          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.863e-34
Identity = 76/169 (44.97%), Postives = 107/169 (63.31%), Query Frame = 2
Query:   20 ETGRIPMERQNSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQ 526
            ETG +     N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE VYYFPQG+IE V+AST +  ++  P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q     + E       R  V+SF K LTASDTS +GGF V ++HA ECLPPL +  Q
Sbjct:    2 ETGNVV----NAQPELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQSE----NQFRPLVNSFTKVLTASDTSAYGGFFVPKKHAIECLPPLPLPAQ 160          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.434e-34
Identity = 75/150 (50.00%), Postives = 94/150 (62.67%), Query Frame = 2
Query:  113 ELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEK--------EXXXXXXXRFHV-HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535
            ELWHACAGPL+++P+ G  V YFPQGH+EQ         D    +Y LP  + CR+++V+L AE  TDE +AQV+LLPES   E  V +        E       R +  H FCKTLTASDTSTHGGFSV RR A++C PPLD S+  P+
Sbjct:   54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQAP-------DFSAAIYGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPS 196          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.081e-34
Identity = 73/141 (51.77%), Postives = 91/141 (64.54%), Query Frame = 2
Query:  110 TELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            ++LWHACAGPLV++P  G  V YFPQGH EQV AS  +  D      +LPSK++C + +V L A+ +TDE +AQ+TL P +  D  A+          R     FCKTLTASDTSTHGGFSV RR A++  PPLD S QPP
Sbjct:   22 SQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPP 162          
The following BLAST results are available for this feature:
BLAST of CF835373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ARFV_ARATH9.881e-3648.15Auxin response factor 22 OS=Arabidopsis thaliana G... [more]
ARFE_ARATH1.290e-3550.33Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFO_ARATH2.201e-3546.20Putative auxin response factor 15 OS=Arabidopsis t... [more]
ARFP_ORYSJ4.904e-3550.00Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFG_ARATH6.404e-3552.48Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]
ARFU_ORYSJ1.092e-3452.78Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI1.427e-3449.31Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFT_ARATH1.863e-3444.97Auxin response factor 20 OS=Arabidopsis thaliana G... [more]
ARFC_ARATH2.434e-3450.00Auxin response factor 3 OS=Arabidopsis thaliana GN... [more]
ARFS_ARATH7.081e-3451.77Auxin response factor 19 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835373 ID=CF835373; Name=CF835373; organism=Citrus sinensis; type=EST; length=537bp
ACCCATTAAGTCTTGTAACGAGACTGGTAGAATTCCTATGGAACGGCAGA
ATAGTAATTCCACAACTTCCGGTGTCAAACGAGTTGGGGACCCCGAAATG
GCGCTCTACACGGAGCTGTGGCATGCCTGCGCCGGACCTTTGGTCACCGT
CCCTCGAGAAGGCGAGCGCGTGTACTACTTCCCTCAAGGCCACATAGAGC
AGGTGGAAGCGTCAACTAATCAGGTCGCAGACCAGCAAATGCCAGTTTAT
GATCTTCCTTCAAAGATACTCTGTCGTGTAATTAACGTCCAATTAAAGGC
TGAACCTGATACTGATGAGGCGTTTGCTCAAGTGACTTTACTTCCAGAGT
CAAACCAAGATGAGAACGCGGTGGAGAAAGAACCACCTCCACCCCCGCCA
CCAAGATTTCACGTGCATTCGTTTTGTAAAACACTAACGGCATCGGATAC
AAGTACTCATGGTGGGTTTTCGGTACTGAGACGGCATGCTGATGAGTGTC
TTCCACCCTTGGACATGTCACGGCAGCCTCCCACACA
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